GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002259-TA|BGIBMGA002259-PA|IPR002048|Calcium-binding
EF-hand
         (154 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   1.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   4.7  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    20   8.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    20   8.3  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           20   8.3  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 125 DEDDVVINAFKTFDEEGK 142
           D DDV I  F+T  E GK
Sbjct: 106 DPDDVFIRKFETSFESGK 123


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 92   SEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDD 128
            ++KEL+E   +A       +  +L     SGG+ +DD
Sbjct: 1069 TKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTSDDD 1105



 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 60  FKEAFQLMDHDKD 72
           F +AF++ DH+ D
Sbjct: 617 FDDAFEISDHNDD 629


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 92   SEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDD 128
            ++KEL+E   +A       +  +L     SGG+ +DD
Sbjct: 1069 TKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTSDDD 1105



 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 60  FKEAFQLMDHDKD 72
           F +AF++ DH+ D
Sbjct: 617 FDDAFEISDHNDD 629


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 92   SEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDD 128
            ++KEL+E   +A       +  +L     SGG+ +DD
Sbjct: 1069 TKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTSDDD 1105



 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 60  FKEAFQLMDHDKD 72
           F +AF++ DH+ D
Sbjct: 617 FDDAFEISDHNDD 629


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 92   SEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDD 128
            ++KEL+E   +A       +  +L     SGG+ +DD
Sbjct: 1069 TKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTSDDD 1105



 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)

Query: 60  FKEAFQLMDHDKD 72
           F +AF++ DH+ D
Sbjct: 617 FDDAFEISDHNDD 629


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 108 NFTQLLTLFANRMSGGSDEDDVVINAFKTFDEEGKIDSE 146
           +FTQ L+ +     G   E+  +IN      +E K+D +
Sbjct: 81  DFTQHLSQYDTCQQGIYPENKTLINETSLQLDENKLDKK 119


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 108 NFTQLLTLFANRMSGGSDEDDVVINAFKTFDEEGKIDSE 146
           +FTQ L+ +     G   E+  +IN      +E K+D +
Sbjct: 81  DFTQHLSQYDTCQQGIYPENKTLINETSLQLDENKLDKK 119


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 108 NFTQLLTLFANRMSGGSDEDDVVINAFKTFDEEGKIDSE 146
           +FTQ L+ +     G   E+  +IN      +E K+D +
Sbjct: 81  DFTQHLSQYDTCQQGIYPENKTLINETSLQLDENKLDKK 119


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,469
Number of Sequences: 317
Number of extensions: 926
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of query: 154
length of database: 114,650
effective HSP length: 52
effective length of query: 102
effective length of database: 98,166
effective search space: 10012932
effective search space used: 10012932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)
S2: 40 (20.2 bits)