GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002259-TA|BGIBMGA002259-PA|IPR002048|Calcium-binding
EF-hand
         (154 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    78   5e-16
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    78   7e-16
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    53   2e-08
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    41   1e-04
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    40   2e-04
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    28   0.55 
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    28   0.55 
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    27   1.3  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   2.9  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   5.1  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    25   6.8  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    24   8.9  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 78.2 bits (184), Expect = 5e-16
 Identities = 43/106 (40%), Positives = 63/106 (59%), Gaps = 7/106 (6%)

Query: 53  SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGE----ASGPIN 108
           + +Q+AEF+EAF L D D+DG I  N+L     SLG+  +  EL +M+ E     +G I+
Sbjct: 7   TDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTID 66

Query: 109 FTQLLTLFANRMSGGSDEDDVVINAFKTFDEEGK--IDSERLRHAL 152
           FT+ LT+ A +M   +D ++ V  AFK FD++G   I  E L H L
Sbjct: 67  FTEFLTMMARKMK-DTDNEEEVREAFKVFDKDGNGYITVEELTHVL 111



 Score = 37.1 bits (82), Expect = 0.001
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 59  EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEA----SGPINFTQLLT 114
           E +EAF++ D D +G I   +L     SLG   S++E+ +M+ EA     G IN+ +   
Sbjct: 86  EVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSR 145

Query: 115 LFANR 119
           + +++
Sbjct: 146 VISSK 150


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 77.8 bits (183), Expect = 7e-16
 Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 3/117 (2%)

Query: 38  SRKAKRTGSNVFSMFSQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELD 97
           ++ AKR  S  F+  +  Q+ E KEAF L+D D DG IG+ D++    SL + ASE  ++
Sbjct: 28  AQAAKRASSGAFAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASEDSIN 87

Query: 98  EMVGEASGPINFTQLLTLFANRMSGGSDEDDVVINAFKTFD--EEGKIDSERLRHAL 152
            M    + PIN    LT   + +   S  +D ++ AF TFD  + GKI    +R AL
Sbjct: 88  HMFESINPPINLAAFLTAMGSMLCRISPRND-LLEAFSTFDDTQSGKIPISTMRDAL 143


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 52.8 bits (121), Expect = 2e-08
 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 53  SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPINFTQL 112
           S++Q  E KEAF L D DKDG+I  + + +   SLG   ++ EL ++  E    I+  + 
Sbjct: 4   SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNELGDAIDEKKF 63

Query: 113 LTLFANRMSGGSDEDDVVINAFKTFDEE--GKIDSERLRHALMT 154
           ++  +N++     E++  I AF+ FD++  G I++ +    + T
Sbjct: 64  MSFVSNKLRETESEEE-YIKAFRVFDKDNSGYIETAKFADYMKT 106



 Score = 28.3 bits (60), Expect = 0.55
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 59  EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGEASGPIN 108
           E+ +AF++ D D  G I          +LG   S+ E+  MV EA  P N
Sbjct: 79  EYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEAD-PTN 127


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 59  EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMV 100
           EF + FQ+ D D  G+IG  +LR    SLG   S +E+DE++
Sbjct: 78  EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELL 119


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 53  SQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGE----ASGPIN 108
           +++Q  +  EAF+L D DKD  I  ++LRA   +LG  A + E+ +++ +      G + 
Sbjct: 32  TEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQ 91

Query: 109 FTQLLTLFANRMSGGSDEDDVVINAFKTF--DEEGKIDSERLR 149
               + +   ++    D  + +  AF+ F  DE GKI    LR
Sbjct: 92  MEDFVRVMTEKIV-ERDPLEEIKRAFELFDDDETGKISLRNLR 133



 Score = 33.1 bits (72), Expect = 0.019
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 59  EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMVGE 102
           E K AF+L D D+ G I   +LR     L     ++EL+ M+ E
Sbjct: 111 EIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEAMIEE 154


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 92  SEKELDEMVGEASGPINFTQLLTLFANRMSGGSDEDDVVINAFKTFDEE---GKIDSERL 148
           +E EL  +V E       T+L+ + + + SG + E D +  + KTF+ E   G++  ++L
Sbjct: 856 AELELS-LVNEEHNRKKLTELIEIESAKFSGLNKEIDSLSTSMKTFESEINNGELTIQKL 914

Query: 149 RH 150
            H
Sbjct: 915 NH 916


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 47  NVFSMFSQKQVAEFKEAFQLMDHDKDGIIGKNDLRATFDSL-GRLASEKELDEMV 100
           +VFS+   K+  + K AF++ D D+DG I   +L      + G    E +L ++V
Sbjct: 83  SVFSVHGNKE-EKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIV 136


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 59  EFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASEKELDEMV 100
           E +EAF L D    G I   DLR +   LG   ++++L  M+
Sbjct: 13  EAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML 54


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/35 (25%), Positives = 23/35 (65%)

Query: 116 FANRMSGGSDEDDVVINAFKTFDEEGKIDSERLRH 150
           + N  S  +++  +++N+++TF EE  +  E+L++
Sbjct: 106 YKNEWSKKTNDAQILLNSYETFCEEEALIEEKLKN 140


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 56  QVAEFKEAFQLMDHDKDGIIGKNDLRATFDSLGRLASE 93
           + A+FK+ F     DKD +  + +L A  + L +LA +
Sbjct: 212 EYAKFKDKFPEAPLDKDNLQTQKELEARIECLKQLAEK 249


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 12/74 (16%)

Query: 38  SRKAKRTGSNVFSMFSQKQVAEFKEAFQLMDHDKDGIIGKN-------DLRATFDSLGRL 90
           S+K+K+  +N F  F+ +Q  E +E     + D +  + KN         +  FD+L   
Sbjct: 78  SKKSKKAKANAFEAFADEQSVEEEE-----EEDSEKPVRKNKKSSKKASPKNAFDALADD 132

Query: 91  ASEKELDEMVGEAS 104
             +  LDE   E+S
Sbjct: 133 MDDLSLDEEESESS 146


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 72  DGIIGKNDLRATFDSLGRLASEKELDEMVGEASG 105
           D +IG+N  R    SLG   + +EL E    A G
Sbjct: 14  DNVIGRNKSRKRPHSLGGPGALQELKEHTNPAKG 47


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,100
Number of Sequences: 5004
Number of extensions: 20285
Number of successful extensions: 70
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 16
length of query: 154
length of database: 2,362,478
effective HSP length: 67
effective length of query: 87
effective length of database: 2,027,210
effective search space: 176367270
effective search space used: 176367270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)