GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002258-TA|BGIBMGA002258-PA|undefined
         (114 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   5.3  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    19   9.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    19   9.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    19   9.3  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
          protein protein.
          Length = 301

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 30 DGFTVAYGGDAELIPCAGSSNGG 52
          +  T     D+EL P  GS+ GG
Sbjct: 4  NSLTAGCNPDSELFPGFGSTCGG 26


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
          protein 19 protein.
          Length = 119

 Score = 19.4 bits (38), Expect = 9.3
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 55 EHGLEGVIDNVIDNGAEVLECNSGVEVLKECVVEDTGPCS 94
          E  L+   + ++D GA   + +    VL + +  D   CS
Sbjct: 35 ERLLKNYFNCIMDRGACTPDADELKRVLPDALKSDCAKCS 74


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 19.4 bits (38), Expect = 9.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 47  GSSNGGGDEHGLEG 60
           G S GGGD+   +G
Sbjct: 307 GGSEGGGDDISPQG 320


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 19.4 bits (38), Expect = 9.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 47  GSSNGGGDEHGLEG 60
           G S GGGD+   +G
Sbjct: 309 GGSEGGGDDISPQG 322


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.139    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,056
Number of Sequences: 317
Number of extensions: 1256
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 114
length of database: 114,650
effective HSP length: 49
effective length of query: 65
effective length of database: 99,117
effective search space:  6442605
effective search space used:  6442605
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.0 bits)
S2: 38 (19.4 bits)