GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002258-TA|BGIBMGA002258-PA|undefined
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    27   0.73 
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    26   1.3  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    26   1.7  
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    25   3.9  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   3.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    23   9.0  

>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 54  DEHGLEGVIDNVIDNGAEVLECNSGVEVLKECVVEDTGPCSVTPPNP 100
           DE  +E V+ +++  G  +L  ++   VL+ C + D    +  PP P
Sbjct: 208 DEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQPPLP 254


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 47  GSSNGGGDEHGLEGVIDNVIDNGAEVLECNSGVEVLKECVVEDTG----PCSVTPPNPKF 102
           G+ NG G+E  +E  ID   D   E +E  +  E     V   +G    P   T PNP  
Sbjct: 370 GNENGVGEESEMESEID---DRNYETMEEEADGETPLAIVKASSGTKGWPKMFTLPNPSS 426

Query: 103 LHTP 106
           L  P
Sbjct: 427 LFQP 430


>SPBC713.12 |erg1||squalene monooxygenase Erg1
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 12/46 (26%), Positives = 18/46 (39%)

Query: 7  GGPSYIPPDDVLDRVAALLGSTVDGFTVAYGGDAELIPCAGSSNGG 52
          GG   +    + D V  + G    G+ + YG     +P     NGG
Sbjct: 52 GGIEALEKIGIADAVEGIDGQWTSGYQIFYGDSNVSVPYPSKPNGG 97


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 15  DDVLDRVAALLGSTVDGFTVAYGGDAEL 42
           +++L+R+ A+L ST DGF +     A+L
Sbjct: 228 ENMLERIQAILYSTEDGFELPPDQPADL 255


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 646

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/46 (23%), Positives = 21/46 (45%)

Query: 46 AGSSNGGGDEHGLEGVIDNVIDNGAEVLECNSGVEVLKECVVEDTG 91
          A   N    +  + G+  N + N A +   + G   L +C+++ TG
Sbjct: 38 ASEDNKPSIQEVVRGIPQNRVRNWAVIAHIDHGKSTLSDCILKLTG 83


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 77  SGVEVLKECVVEDTGPCSVTPPNPKFLHTPK 107
           S ++ + ECV  + G   +   NPKF  T +
Sbjct: 99  SKIKKILECVCWNCGKLKIDSSNPKFNDTQR 129


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.139    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,962
Number of Sequences: 5004
Number of extensions: 23400
Number of successful extensions: 36
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 6
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 48 (23.4 bits)