GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002258-TA|BGIBMGA002258-PA|undefined
         (114 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK001879-1|BAA91958.1|  314|Homo sapiens protein ( Homo sapiens ...    29   4.4  
AY006247-1|AAG15750.1|   31|Homo sapiens T cell receptor beta ch...    28   7.7  

>AK001879-1|BAA91958.1|  314|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11017 fis, clone PLACE1003342. ).
          Length = 314

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 38  GDAELIPCAGSSNGGGDEHGLEGVID-NVIDNGAEVLECNSGVE 80
           G    +P   S N  GD HG +G  D  ++D  A V E  + +E
Sbjct: 259 GPVHAMPVVDSGNRQGDTHGSDGDGDGEIVDEDAAVAEALAALE 302


>AY006247-1|AAG15750.1|   31|Homo sapiens T cell receptor beta
          chain protein.
          Length = 31

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 38 GDAELIPCAGSSNGGGDE 55
          GD+ +  CA SS GGGDE
Sbjct: 3  GDSAVYLCASSSTGGGDE 20


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.313    0.139    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,027,430
Number of Sequences: 224733
Number of extensions: 873536
Number of successful extensions: 1296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1295
Number of HSP's gapped (non-prelim): 2
length of query: 114
length of database: 73,234,838
effective HSP length: 80
effective length of query: 34
effective length of database: 55,256,198
effective search space: 1878710732
effective search space used: 1878710732
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 59 (27.9 bits)