GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002258-TA|BGIBMGA002258-PA|undefined
         (114 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical pr...    28   1.8  
Z81080-4|CAD30439.1|  608|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical pr...    26   7.4  
U21308-5|AAB93318.1|  258|Caenorhabditis elegans Warthog (hedgeh...    26   7.4  
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    26   7.4  
Z31590-5|CAA83462.1|  245|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U53147-3|AAM29659.1|  550|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z68003-3|CAA91977.1|  849|Caenorhabditis elegans Hypothetical
           protein E02H4.4 protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 5   GGGGPSYIPPDDVLDRVAALLGSTVDGFTVAYGGDAE-LIPCA-GSSNGGGDEHGLEGVI 62
           GGGG S +P                DG   + GG  E ++P   GSS+GGG E  +    
Sbjct: 751 GGGGESVVPGGRGSAEGGGGASVVPDGRGSSDGGGGESVVPGGRGSSDGGGGESVVPHGR 810

Query: 63  DNVIDNGAEVLECNS 77
             V+      L CNS
Sbjct: 811 KRVVLRLLVCLSCNS 825


>Z81080-4|CAD30439.1|  608|Caenorhabditis elegans Hypothetical
           protein F39H2.5 protein.
          Length = 608

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 86  VVEDTGPCSVTPPNPKFLHTPKASGKLF 113
           V E+T  C + PP+P+     + SGK F
Sbjct: 71  VTENTFKCYIVPPDPRIGKAVEESGKEF 98


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 6/101 (5%)

Query: 15  DDVLDRVAALLGSTVDGFTVAYGGDAELIPCAGSSNGGGDEHGLEGVIDNVIDNGAEVL- 73
           D  L   +AL  S V        G  E    A +      +H L     NVI+NGA V  
Sbjct: 703 DATLPFTSALASSIVTSNGSETNGHGEQAHAAQNGGIKIPKHDLMQSHSNVIENGAAVKY 762

Query: 74  -ECNSGVE-VLKECVVEDTGPCSVTPPNPKFLHTPKASGKL 112
            + +  ++ VL  C  E      +   +P+ LH P A G +
Sbjct: 763 EKTDPALDAVLNACAQESE---QIDASHPENLHMPAAPGSV 800


>Z46267-8|CAA86424.2| 1030|Caenorhabditis elegans Hypothetical
           protein F49E2.5c protein.
          Length = 1030

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 58  LEGVIDNVIDNGAEVLECNSGVEVLKECVVEDTGPCSVTPPNPKFLHTPKA 108
           +E V++NV++N  E  E      V K   V +T   +V       + TPKA
Sbjct: 353 VEEVVENVVENVVEKNESPESEPVAKLITVSNTEASAVNVMGFSDIVTPKA 403


>U21308-5|AAB93318.1|  258|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 10 protein.
          Length = 258

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 63  DNVIDNGAEVLECNSGVEVLKECVVEDTGPCSVTPPNP 100
           D   DN AE++E N   EV++E   E+    +   P P
Sbjct: 200 DQPNDNEAEIVESNDEEEVVEEETEEEEEVTTTPAPKP 237


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 11  YIPPDDVLDRVAALLGSTVDGFTVAYGGDAEL 42
           Y+P DD+ D   A   + +D  TV   G AEL
Sbjct: 370 YVPADDLTDPAPATTFAHLDATTVLSRGIAEL 401


>Z31590-5|CAA83462.1|  245|Caenorhabditis elegans Hypothetical
           protein R01H10.4 protein.
          Length = 245

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%)

Query: 60  GVIDNVIDNGAEVLECNSGVEVLKECVVEDTGPCSVTPP 98
           GV+D + D   E   C     +  +   EDTG C V PP
Sbjct: 123 GVVDRICDLPTEKQAC----AMTPQAFDEDTGLCRVWPP 157


>U53147-3|AAM29659.1|  550|Caenorhabditis elegans Hypothetical
           protein C01B7.1b protein.
          Length = 550

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/17 (70%), Positives = 12/17 (70%)

Query: 14  PDDVLDRVAALLGSTVD 30
           P  VLD VAAL GST D
Sbjct: 377 PISVLDNVAALFGSTPD 393


>U53147-2|AAA96114.2|  935|Caenorhabditis elegans Hypothetical
           protein C01B7.1a protein.
          Length = 935

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/17 (70%), Positives = 12/17 (70%)

Query: 14  PDDVLDRVAALLGSTVD 30
           P  VLD VAAL GST D
Sbjct: 377 PISVLDNVAALFGSTPD 393


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.139    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,663
Number of Sequences: 27539
Number of extensions: 151208
Number of successful extensions: 211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 10
length of query: 114
length of database: 12,573,161
effective HSP length: 72
effective length of query: 42
effective length of database: 10,590,353
effective search space: 444794826
effective search space used: 444794826
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 53 (25.4 bits)