GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002257-TA|BGIBMGA002257-PA|undefined
         (355 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   1.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   1.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   1.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   1.1  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 142  IKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDES 190
            ++ L+    + E  I+ SG   RR  ++ S     HH  A    G DES
Sbjct: 1141 LEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDES 1189


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 142  IKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDES 190
            ++ L+    + E  I+ SG   RR  ++ S     HH  A    G DES
Sbjct: 1141 LEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDES 1189


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 142  IKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDES 190
            ++ L+    + E  I+ SG   RR  ++ S     HH  A    G DES
Sbjct: 1141 LEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDES 1189


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 142  IKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDES 190
            ++ L+    + E  I+ SG   RR  ++ S     HH  A    G DES
Sbjct: 1141 LEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHHLGAVTEEGGDES 1189


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,777
Number of Sequences: 317
Number of extensions: 2933
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 355
length of database: 114,650
effective HSP length: 57
effective length of query: 298
effective length of database: 96,581
effective search space: 28781138
effective search space used: 28781138
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)