Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002257-TA|BGIBMGA002257-PA|undefined
(355 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 36 0.009
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 30 0.57
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 29 1.3
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 28 1.8
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 28 1.8
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 27 3.1
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 4.1
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 27 5.4
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc... 27 5.4
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 27 5.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.1
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 26 7.1
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 26 7.1
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 9.4
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 35.9 bits (79), Expect = 0.009
Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 11/171 (6%)
Query: 86 KSSYVTQDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNL 145
K ++ Q + K D + ++NT+RG N D + +ES+ EE +LI L
Sbjct: 250 KKNWGRQSNSPNSNKKTDH-AYPGASMNTERGLIQNLEDSDDIHEESSDTLEEPLLINEL 308
Query: 146 SSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERIIVP 205
+ S N + +KL E N + NL + K + S++D+++ +
Sbjct: 309 NRTSFLNSN----NNLKLNEAEENQNLLNLRSPKSSGKADNLTIKSSSNIDKVTSNDLY- 363
Query: 206 SLIAPSQSYAKVVAVQNNDGFTSVQSKKKRNNKFKXXXXXXXXESNEKFRS 256
L QS+ KV Q T++ K+ N+ F ++ F S
Sbjct: 364 -LDNNLQSHFKVTESQP----TNLGRKEYSNSPFSIRARKDAATTSSSFES 409
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 29.9 bits (64), Expect = 0.57
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 2/124 (1%)
Query: 87 SSYVTQDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNLS 146
S +V +D LR + S+ + + + + F S + N G E+ I +S
Sbjct: 21 SKFVKKDNFSSLRL-ARAYTFSTRSTAVSQFSLLSLSQRSFQSLKINKGIPEKHKIPLIS 79
Query: 147 SNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKG-NGNDESLLSSVDQLSERIIVP 205
S + + +G + NG N + + KG NGND + + I+
Sbjct: 80 SKQFSVTSKRSQNGSSGSNSDANGRKNGQKNDDSKKKGLNGNDPKKVFEIALNGNTILGG 139
Query: 206 SLIA 209
L+A
Sbjct: 140 ILVA 143
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 28.7 bits (61), Expect = 1.3
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 97 DLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNLSSNSINTEN-- 154
D++ +S T + RGA K D+E +E ++ EE +KNL I +
Sbjct: 913 DVKIDIGDVSTEETTPVSVRGA---KADVENAIKEISAIAEE---VKNLVEKVIKIDREY 966
Query: 155 ---LIEGSGIKLRRY--ELNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERIIVPSL 207
LI +G KL+ E GS + + S NGN E +SV ++ IV +L
Sbjct: 967 HRYLIGPNGSKLQNTIKECGGSTDKTETARLISFSNGNSEEERNSVVLRGDKEIVEAL 1024
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 28.3 bits (60), Expect = 1.8
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 100 TKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNLSSNSINTENLIEGS 159
TKCD M+ NI T R T + + C I + ++SI + I+
Sbjct: 643 TKCDYFYMNIQNIGTVRFRLYLDSSKALTDRLNVLLCN---YIADKPNSSIQLLSCIKRL 699
Query: 160 GIKLRRYELNGSDNNLSHHNV 180
++R+E G DN L + V
Sbjct: 700 NDDVKRFERGGDDNALKSYGV 720
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 162 KLRRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERIIVPSLIAPSQSY 214
+ RR E N +N+ S N ++ GNGN E+ L E++ + + PS+ +
Sbjct: 253 RFRRREDNERNNSNSPRNFSTHGNGNGENGQPRRKWLEEKVYIN--LTPSRGF 303
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 168 LNGSDNNLSHHNVASKGNGNDESLLSSVDQLSE 200
L N L+HH+ ASK GND Q+ E
Sbjct: 17 LKAEYNALAHHSFASKARGNDYESSMIQSQIQE 49
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.1 bits (57), Expect = 4.1
Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 5/117 (4%)
Query: 121 NKIDMEFTSQESNSG--CEEQVLIKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHH 178
+K+ +F E + G C+E + + S TEN+ RR L +SH
Sbjct: 59 SKVTTDFCKLEESKGIICQENLHTEGAKSK---TENISGEDKSSQRRTRLKQIQEFISHR 115
Query: 179 NVASKGNGNDESLLSSVDQLSERIIVPSLIAPSQSYAKVVAVQNNDGFTSVQSKKKR 235
N N + + + V S ++ +S+ K + N + + + KR
Sbjct: 116 RSFLNSNANSVESEKILAENNHMFNVKSKLSNKESFIKTRRPRTNGELSDLSLQPKR 172
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/79 (21%), Positives = 33/79 (41%)
Query: 84 AIKSSYVTQDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIK 143
AI + +++DL TKC +M+S I + F + + + E + IK
Sbjct: 144 AIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENMIGIK 203
Query: 144 NLSSNSINTENLIEGSGIK 162
+ ++ L++G K
Sbjct: 204 KVPGGAMEDSLLVKGVAFK 222
>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 688
Score = 26.6 bits (56), Expect = 5.4
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 191 LLSSVDQLSERIIVPSLIAPSQSYAKVVAVQNNDGFTSVQSKKKRNNKFKXXXXXXXXES 250
LLSS + S ++ P + Q+ A +Q+ FT+V + R+ +F ES
Sbjct: 193 LLSSSNNFSPQLRSPKISHRLQTSATSSPLQHKRPFTNVPERVSRDIEFAPLDSARPSES 252
Query: 251 NEKFRSAD 258
+ + D
Sbjct: 253 SSPYSEVD 260
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 119 FCNKIDMEFTSQESNSGCEEQVLIKNLSSNSINTENL 155
F D E T ES+S E+Q L K LSS S+++ ++
Sbjct: 601 FLENHDWE-TCSESSSASEDQSLCKQLSSFSLSSSDI 636
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 7.1
Identities = 28/173 (16%), Positives = 62/173 (35%), Gaps = 2/173 (1%)
Query: 85 IKSSYVTQDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKN 144
+ SS T + + S + ++ + + + +S ++S +I +
Sbjct: 216 VSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISS 275
Query: 145 LSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERIIV 204
SS+S + + S I + + S + +S + + S LSS S
Sbjct: 276 SSSSSSSPTST--SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS 333
Query: 205 PSLIAPSQSYAKVVAVQNNDGFTSVQSKKKRNNKFKXXXXXXXXESNEKFRSA 257
S + S + + + ++ F+S S K ++ F S+ S+
Sbjct: 334 SSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSS 386
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 147 SNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVA 181
+ ++ + N++EGS +L YE + S + HHN+A
Sbjct: 681 TQAMKSANVLEGSSTRLNSYEPSVS-SAYPHHNLA 714
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 276 DITDYIYKKTGENVTLEGINIKQQCEHNAYKFIVSQR 312
D+TD KK+ +NV N++Q N YK ++ +
Sbjct: 90 DVTD---KKSFDNVRTWFSNVEQHASENVYKILIGNK 123
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 130 QESNSGCEEQVLIKNLSSNSINTE 153
+ S S EE+ +I+NLS +S+N E
Sbjct: 39 KSSFSNSEEESIIENLSDSSVNKE 62
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.129 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,837
Number of Sequences: 5004
Number of extensions: 61365
Number of successful extensions: 152
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 17
length of query: 355
length of database: 2,362,478
effective HSP length: 73
effective length of query: 282
effective length of database: 1,997,186
effective search space: 563206452
effective search space used: 563206452
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)
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