GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002257-TA|BGIBMGA002257-PA|undefined
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0347 + 17036086-17036206,17036548-17037173                       31   1.1  
06_01_0574 + 4051723-4051805,4051913-4052366                           31   1.9  
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    30   3.2  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    29   4.3  
09_04_0165 + 15274448-15277336                                         29   7.5  
07_01_0219 - 1627669-1629765                                           28   9.9  

>07_03_0347 + 17036086-17036206,17036548-17037173
          Length = 248

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 7   PCAKLESLSAEVPSTARKGKGKENRVLNDIIAIFKTE---PDALPVFVARDLNKLPPIT 62
           P AKL+  +A  P+ A    GKENR ++D +++  T    P  +P + A   + LPP T
Sbjct: 66  PRAKLDFAAAPSPARAAVAAGKENRHVDDEVSLDLTAMAMPTPMPTWTA---SPLPPPT 121


>06_01_0574 + 4051723-4051805,4051913-4052366
          Length = 178

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 174 NLSHHNVASKGNGNDE-SLLSSVDQLSERIIVPSLIAPSQSYAKVVAVQN-NDGFTSVQ 230
           NL+    A +GN ND+ S  SS    S R ++PSL A + +     A    + GF   Q
Sbjct: 100 NLASVQAAQRGNSNDDDSTTSSSAAASSRAVIPSLPAAAGALGNAAATAEWSGGFLEEQ 158


>04_01_0508 +
           6647812-6647820,6647864-6648226,6649351-6650673,
           6653569-6653766,6654485-6654568,6655175-6655920,
           6656480-6657341
          Length = 1194

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 109 STNINTKRGAFCNKIDM-EFTSQESNSGCEEQVLIKNLSSNSINTENLIEGSGIKLRRYE 167
           S + N +   F  K  M +   QE        ++I +   NSI  E L   +   +  + 
Sbjct: 644 SNHENLQHAIFLRKAGMLDNRPQEEKDRMGAIIVISDNHDNSICMEAL--STNYNIHTFG 701

Query: 168 LNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERII 203
            NG  N  + +N+AS+ NG  + L    + ++E  I
Sbjct: 702 FNGMHNVRAMYNIASRSNGMYDLLNDDRNLITEAFI 737


>12_02_1035 -
           25570009-25571241,25571940-25573709,25573797-25575118,
           25575208-25575555,25576540-25576633
          Length = 1588

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 94  EMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNLSSNSINTE 153
           E+++LR K   +  S  ++N+K   F ++  M     E  S   E++  KN+   ++ +E
Sbjct: 490 EVEELREKKVALEESCKHLNSKINGFQSERSMFIARIEGISHTMEKLSEKNVFLENLLSE 549

Query: 154 NLIEGSGIKLRRYELNGSDNNL-SHHNVASKGNGNDESLLSSVDQLSERII 203
           N  E   +++ R +LN S+ +  +  N  S       +L+  VD ++  ++
Sbjct: 550 NNTE---LEILRRKLNDSEESTHALLNQNSVLRSEKRTLVREVDSMNGALL 597


>09_04_0165 + 15274448-15277336
          Length = 962

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 134 SGCEEQVLIKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESLLS 193
           +GCE      N+  N    +  IEG    L   +  G + +L  +N   K  G    +  
Sbjct: 850 AGCEFDHYTYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYG-IAGMPE 908

Query: 194 SVDQLSERIIVPSLIAPSQSYAKVV-AVQNNDGF 226
              +L + + +  + A   +Y  ++ A+Q N+ F
Sbjct: 909 DAVKLMQEMRIKGIAADRVTYTNLIAALQRNENF 942


>07_01_0219 - 1627669-1629765
          Length = 698

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 198 LSERIIVPSLIAPSQSYAKVVAVQNNDGFTS-VQSKKKRNNK 238
           L   + +P L+  S S+  ++A+  NDGF S VQS    N+K
Sbjct: 644 LKREVALPELMPTSMSF-HMLALMQNDGFDSYVQSYPSSNSK 684


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,752,709
Number of Sequences: 37544
Number of extensions: 326936
Number of successful extensions: 588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 6
length of query: 355
length of database: 14,793,348
effective HSP length: 83
effective length of query: 272
effective length of database: 11,677,196
effective search space: 3176197312
effective search space used: 3176197312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)