GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002256-TA|BGIBMGA002256-PA|undefined
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   1.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   4.6  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    24   8.1  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    24   8.1  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 15  FIAAHDRIINAWSHTSPAWQLCI-TW-TTHDTHATFKLSLDSPQTSSSTGDNPAAFSS 70
           F A   +I++    T+   QL + +W T H  H     +L +P+   STG     F+S
Sbjct: 238 FYAERSKIVHVAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGTGFVLFAS 295


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 23  INAWSHTSPAWQLCITWTTHDTHATFKL---SLDSPQTSSSTGDNPAAFSSVSTHC 75
           +NA   T    ++  T  T DT A+  +   S  S  ++S+TG + +   S ST C
Sbjct: 60  LNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSC 115


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 13/60 (21%), Positives = 26/60 (43%)

Query: 23  INAWSHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVSTHCKLRAALA 82
           +NAW+    ++  C+T    +  A  K  L   +TSS        F  +    ++R +++
Sbjct: 533 VNAWNSLETSYYNCMTVLEDEVIAQLKSLLQYSKTSSQMFTTLMRFQPLFFRTRVRTSIS 592


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 40  TTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVST 73
           ++HD   +   S +S   S S+  NP ++S  ST
Sbjct: 86  SSHDESDSMSSSSESDSDSVSSESNPKSYSDSST 119


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 42  HDTHATFKLSLDSPQTSSSTGDNPAAFSSVSTH 74
           H + +++ +S  SP + +S+G   + F S S H
Sbjct: 124 HSSSSSYAVSPTSPTSPTSSGPIGSNFDSASEH 156


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.122    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 426,170
Number of Sequences: 5004
Number of extensions: 11999
Number of successful extensions: 48
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 10
length of query: 124
length of database: 2,362,478
effective HSP length: 65
effective length of query: 59
effective length of database: 2,037,218
effective search space: 120195862
effective search space used: 120195862
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)