GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002256-TA|BGIBMGA002256-PA|undefined
         (124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1763 - 29316969-29318120                                         29   1.4  
08_01_0070 + 490655-493165                                             26   10.0 
06_03_1377 - 29692895-29692899,29700435-29702190                       26   10.0 

>07_03_1763 - 29316969-29318120
          Length = 383

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 37  ITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVSTHCKLR 78
           +++  H    TF +S+     S S G N   FS  + HC+ R
Sbjct: 190 VSYAVHPDQRTFFVSVKEAFCSRSDGGNKGTFSFDTKHCEWR 231


>08_01_0070 + 490655-493165
          Length = 836

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 48  FKLSLDSPQTSSSTGDNPAAFSSVST 73
           F LSL S  +SS+T   PAA S+ ST
Sbjct: 639 FGLSLASSSSSSATATPPAACSTSST 664


>06_03_1377 - 29692895-29692899,29700435-29702190
          Length = 586

 Score = 25.8 bits (54), Expect = 10.0
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 18  AHDRIINAWSHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVSTHC 75
           +H+R+  +      A    ++ T H  H    +S D    S++      A SS+ST C
Sbjct: 439 SHERLTISHEKLKEAHDNLLSTTQHGAHIDVGISCDLLDDSATCHIAHVASSSISTSC 496


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.122    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,857,127
Number of Sequences: 37544
Number of extensions: 81641
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 193
Number of HSP's gapped (non-prelim): 3
length of query: 124
length of database: 14,793,348
effective HSP length: 74
effective length of query: 50
effective length of database: 12,015,092
effective search space: 600754600
effective search space used: 600754600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)