GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002256-TA|BGIBMGA002256-PA|undefined
         (124 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  

>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 37   ITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVSTHCKLRAAL 81
            +T   H+THA  +L  DSP  +S  G +  A   + + C+ +AAL
Sbjct: 3656 VTIPCHNTHAWAELPTDSPTITSVHGLDFEAEGELRSLCQEKAAL 3700


>SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 18  AHDRIINAWSHTSPAWQLCI-TWTT-HDTHATFKLSLDSPQTSSSTGDN 64
           A D +IN W   + AW   I TW T  +T  T   + D+      TG N
Sbjct: 70  AWDTVINTWDTVTNAWDTVINTWDTGTNTRDTVTNARDAVTNMRDTGTN 118


>SB_37814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 28  HTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVST 73
           +T  A+Q   + TT  +    K  L+ P T++ T D+P+A S  +T
Sbjct: 81  YTKSAFQQVDSATTASSPFLIKNLLNLPSTATQTSDHPSAQSPRNT 126


>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/45 (26%), Positives = 19/45 (42%)

Query: 21  RIINAWSHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNP 65
           R  N  +     W +  TW    T A  +L+ ++P    +T D P
Sbjct: 197 RYYNIVTRHRGCWVIACTWLISTTTAFIQLAWNNPSVLDNTHDEP 241


>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1565

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 19  HDRIINAWSHTSPAWQLCITWTTH--DTHATFKLSLDSPQTSSSTGDNPAAFSSVSTHCK 76
           H ++I  WS   P  +L  TW+     T       + +P T  +  +   A S++     
Sbjct: 294 HGKLITTWSLRHPHCKLITTWSRSQPSTRQADHTLVTAPSTRQADHNTATAPSTLQADHN 353

Query: 77  LRAALATR 84
           +  A +TR
Sbjct: 354 MATAPSTR 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.122    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,279
Number of Sequences: 59808
Number of extensions: 94222
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 5
length of query: 124
length of database: 16,821,457
effective HSP length: 74
effective length of query: 50
effective length of database: 12,395,665
effective search space: 619783250
effective search space used: 619783250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)