Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002256-TA|BGIBMGA002256-PA|undefined
(124 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3 prot... 30 1.8
AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein. 30 1.8
AF007193-1|AAC02271.1| 441|Homo sapiens mucin protein. 29 4.2
U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein. 29 5.6
U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein. 29 5.6
AY395768-1|AAR21239.1| 651|Homo sapiens patched protein. 29 5.6
AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1 (Dros... 29 5.6
AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1 (Dros... 29 5.6
AB209495-1|BAD92732.1| 586|Homo sapiens patched variant protein. 29 5.6
>AF113616-1|AAF13032.1| 1217|Homo sapiens intestinal mucin 3
protein.
Length = 1217
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 27 SHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVST 73
SH++P + IT T +H+T + T +++ D P+ SS++T
Sbjct: 127 SHSTPGFTSSITTTETTSHSTPSFTSSITTTETTSHDTPSFTSSITT 173
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 22 IINAWSHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVST 73
I SH++P++ IT T +H+T + T + + P+ SS++T
Sbjct: 3 ITETTSHSTPSYTTSITTTETPSHSTPSYTTSITTTETPSHSTPSFTSSITT 54
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 27 SHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVST 73
SH++P++ IT T +H+T + T +++ P+ SS+ T
Sbjct: 25 SHSTPSYTTSITTTETPSHSTPSFTSSITTTETTSHSTPSFTSSIRT 71
>AF007194-1|AAC02272.1| 957|Homo sapiens mucin protein.
Length = 957
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 27 SHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVST 73
SH++P + IT T +H+T + T +++ D P+ SS++T
Sbjct: 127 SHSTPGFTSSITTTETTSHSTPSFTSSITTTETTSHDTPSFTSSITT 173
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 22 IINAWSHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVST 73
I SH++P++ IT T +H+T + T + + P+ SS++T
Sbjct: 3 ITETTSHSTPSYTTSITTTETPSHSTPSYTTSITTTETPSHSTPSFTSSITT 54
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 27 SHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVST 73
SH++P++ IT T +H+T + T +++ P+ SS+ T
Sbjct: 25 SHSTPSYTTSITTTETPSHSTPSFTSSITTTETTSHSTPSFTSSIRT 71
>AF007193-1|AAC02271.1| 441|Homo sapiens mucin protein.
Length = 441
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 27 SHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVST 73
SH++P + IT T +H+T + + T +++ +P+ SS++T
Sbjct: 390 SHSTPRFTSSITTTETPSHSTPRFTSSITNTKTTSHSSPSFTSSITT 436
>U59464-1|AAC50550.1| 1447|Homo sapiens PATCHED protein.
Length = 1447
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 50 LSLDSPQTSSSTGDNPAAFSSVSTHC 75
LS SP+++SST D + FS S HC
Sbjct: 697 LSCQSPESTSSTRDLLSQFSDSSLHC 722
>U43148-1|AAC50496.1| 1296|Homo sapiens PTC protein.
Length = 1296
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 50 LSLDSPQTSSSTGDNPAAFSSVSTHC 75
LS SP+++SST D + FS S HC
Sbjct: 546 LSCQSPESTSSTRDLLSQFSDSSLHC 571
>AY395768-1|AAR21239.1| 651|Homo sapiens patched protein.
Length = 651
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 50 LSLDSPQTSSSTGDNPAAFSSVSTHC 75
LS SP+++SST D + FS S HC
Sbjct: 292 LSCQSPESTSSTRDLLSQFSDSSLHC 317
>AL161729-2|CAH73818.1| 1296|Homo sapiens patched homolog 1
(Drosophila) protein.
Length = 1296
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 50 LSLDSPQTSSSTGDNPAAFSSVSTHC 75
LS SP+++SST D + FS S HC
Sbjct: 546 LSCQSPESTSSTRDLLSQFSDSSLHC 571
>AL161729-1|CAH73817.1| 1447|Homo sapiens patched homolog 1
(Drosophila) protein.
Length = 1447
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 50 LSLDSPQTSSSTGDNPAAFSSVSTHC 75
LS SP+++SST D + FS S HC
Sbjct: 697 LSCQSPESTSSTRDLLSQFSDSSLHC 722
>AB209495-1|BAD92732.1| 586|Homo sapiens patched variant protein.
Length = 586
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 50 LSLDSPQTSSSTGDNPAAFSSVSTHC 75
LS SP+++SST D + FS S HC
Sbjct: 133 LSCQSPESTSSTRDLLSQFSDSSLHC 158
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.315 0.122 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,021,449
Number of Sequences: 224733
Number of extensions: 420465
Number of successful extensions: 959
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 918
Number of HSP's gapped (non-prelim): 41
length of query: 124
length of database: 73,234,838
effective HSP length: 81
effective length of query: 43
effective length of database: 55,031,465
effective search space: 2366352995
effective search space used: 2366352995
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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