GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002256-TA|BGIBMGA002256-PA|undefined
         (124 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    28   2.2  
U64835-8|AAY86281.1|  166|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore...    27   5.1  
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    27   5.1  
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    26   6.8  
AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical ...    26   8.9  

>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 53  DSPQTSSSTGDNPAAFSSVSTH 74
           D  +TSS+T DN   FS  STH
Sbjct: 484 DEVETSSTTADNNIPFSDCSTH 505


>U64835-8|AAY86281.1|  166|Caenorhabditis elegans Hypothetical
           protein T09D3.8 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 24  NAWSHTSPAWQLCITW-----TTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVSTHCK 76
           N W  T      C+ W     T+ D  +T  L  DSP  ++  GD+ A  S  +  C+
Sbjct: 85  NEWLQTDSTSDGCVQWNVYCNTSPDCTSTI-LYADSPSGTTEIGDDLATSSEATLTCQ 141


>AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform b protein.
          Length = 211

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 17  AAHDRIINAWSHTSPAWQLCITWTTHDTHAT 47
           A++D+ +  W+     WQ    W  H+   T
Sbjct: 78  ASYDKKVIIWNEQQGRWQKAYEWAAHEASTT 108


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 17  AAHDRIINAWSHTSPAWQLCITWTTHDTHAT 47
           A++D+ +  W+     WQ    W  H+   T
Sbjct: 78  ASYDKKVIIWNEQQGRWQKAYEWAAHEASTT 108


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 30  SPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVSTHCKLR 78
           +P+  +  T + +  +   + SL  PQT  + GD    ++S  T+C+ R
Sbjct: 324 APSLSIQSTDSFNSAYEDAEESLIQPQTKKNEGDAYGKYNSTLTNCQTR 372


>AC024785-3|AAF60597.2|  456|Caenorhabditis elegans Hypothetical
           protein Y46C8AL.2 protein.
          Length = 456

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)

Query: 39  WTTHDTHATFKLSLDSPQTSSSTGDNPAAFSSVST 73
           W T  T +T K +  +P T  ST   P    S  T
Sbjct: 149 WATKPTPSTMKSTPTTPTTIKSTPTTPTTMKSTPT 183


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.122    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,197
Number of Sequences: 27539
Number of extensions: 63472
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 6
length of query: 124
length of database: 12,573,161
effective HSP length: 73
effective length of query: 51
effective length of database: 10,562,814
effective search space: 538703514
effective search space used: 538703514
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)