GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002255-TA|BGIBMGA002255-PA|undefined
         (53 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   1.3  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    19   3.0  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    19   5.3  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory
          receptor candidate 53 protein.
          Length = 659

 Score = 20.6 bits (41), Expect = 1.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 16 LQVPNNNIRTVGLANNITRSVEHLPFVVY 44
          +  P+  +  +    NIT S   LPF +Y
Sbjct: 31 INTPSFKLSKIRSFLNITASAVLLPFAIY 59


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 5/21 (23%), Positives = 13/21 (61%)

Query: 5   HLRNFQDKLPYLQVPNNNIRT 25
           + RN  + + ++ +  +N+RT
Sbjct: 714 NFRNSDELIKFISIAKHNVRT 734


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like
          protein protein.
          Length = 160

 Score = 18.6 bits (36), Expect = 5.3
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 6  LRNFQDKLPYLQVPNN 21
          L  F+D +   ++PNN
Sbjct: 46 LARFRDSVKLSKIPNN 61


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,084
Number of Sequences: 317
Number of extensions: 437
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 53
length of database: 114,650
effective HSP length: 33
effective length of query: 20
effective length of database: 104,189
effective search space:  2083780
effective search space used:  2083780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)
S2: 34 (17.8 bits)