GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002255-TA|BGIBMGA002255-PA|undefined
         (53 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   1.2  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    24   2.8  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    23   3.7  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    23   6.4  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    23   6.4  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    22   8.5  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 8   NFQD-KLPYLQVPNNNIRTVGLANNITRSVEHLPF 41
           +F D KLP +Q+PN +  TV L NN   +   LP+
Sbjct: 333 SFSDLKLP-IQLPNTSTETVQLENNDPLNSIGLPY 366


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 4  SHLRNFQDKLPYLQV 18
          SHL+NFQD+  Y  V
Sbjct: 66 SHLQNFQDQFDYSSV 80


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)

Query: 3   ESHLRNFQDKLPY---LQVPNNNIRTVGLANN 31
           ES LR  Q K  +    Q P+N+I+T+G +N+
Sbjct: 139 ESRLRAEQHKRRFGVHSQQPSNSIQTIGYSNS 170


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/16 (68%), Positives = 12/16 (75%), Gaps = 1/16 (6%)

Query: 16  LQVP-NNNIRTVGLAN 30
           L VP NNN RTVG A+
Sbjct: 590 LNVPVNNNFRTVGYAS 605


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 11  DKLPYLQVPNNNIRTVGLANNITRSVEHLPF 41
           D L Y  V       VG++N++  SV H P+
Sbjct: 175 DSLLYYPVWVRRTDPVGVSNDVMGSVPHHPY 205


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 12  KLPYLQVPNNNIRTVGLANNITRSVEH 38
           K P ++  NN++  + LA  ++ +++H
Sbjct: 171 KKPVIRYDNNSLLCLKLAEEVSYTIQH 197


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 275,366
Number of Sequences: 5004
Number of extensions: 8251
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 6
length of query: 53
length of database: 2,362,478
effective HSP length: 34
effective length of query: 19
effective length of database: 2,192,342
effective search space: 41654498
effective search space used: 41654498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)