GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002255-TA|BGIBMGA002255-PA|undefined
         (53 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)                 33   0.033
SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)              27   2.8  
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)                 26   3.7  
SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  

>SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)
          Length = 651

 Score = 33.1 bits (72), Expect = 0.033
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 6   LRNFQDKLPYLQVPNNNIRTVGLANNITRSVEH 38
           LRN   KL +L + NNNIR  G ANNI  ++ H
Sbjct: 525 LRNKNCKLTHLNISNNNIRDEG-ANNIGEALRH 556


>SB_39603| Best HMM Match : HATPase_c (HMM E-Value=0.0009)
          Length = 888

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 14  PYLQVPNNNIRTVGLANNITRSVEHLPFVVYSHTGD 49
           PY   P   +RT+    N  R+++ LP    +H  D
Sbjct: 146 PYRLYPTQTVRTIQTLPNTVRTIQTLPSTDSAHRTD 181


>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
          Length = 996

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 1   MSESHLRNFQDKLPYLQVPNNNIRTV----GLANNITRS 35
           M E HL+  Q+  P +Q+  NN +T     G + N TRS
Sbjct: 181 MDEQHLKTLQNAQPEVQLIENNAKTQNAYRGSSPNETRS 219


>SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 1   MSESHLRNFQDKLPYLQVPNNNIRT 25
           M E HL+  Q+  P +Q+  NN  T
Sbjct: 313 MDEQHLKTLQNAQPEVQLIKNNAET 337


>SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 1   MSESHLRNFQDKLPYLQVPNNNIRTVGLANNITRSV 36
           +SES +RNF+DK+  L   +      G++ +++ +V
Sbjct: 78  LSESTVRNFRDKVKKLLSEHKACEDSGVSKDVSANV 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,327
Number of Sequences: 59808
Number of extensions: 53108
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90
Number of HSP's gapped (non-prelim): 5
length of query: 53
length of database: 16,821,457
effective HSP length: 33
effective length of query: 20
effective length of database: 14,847,793
effective search space: 296955860
effective search space used: 296955860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)