GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002255-TA|BGIBMGA002255-PA|undefined
         (53 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57592-1|AAC50822.1| 1266|Homo sapiens jumonji putative protein ...    28   5.4  
BC046246-1|AAH46246.1| 1246|Homo sapiens jumonji, AT rich intera...    28   5.4  
BC046184-1|AAH46184.1|  369|Homo sapiens JARID2 protein protein.       28   5.4  
AL136162-1|CAI15719.1| 1246|Homo sapiens Jumonji, AT rich intera...    28   5.4  
AL021938-1|CAI19873.1| 1246|Homo sapiens Jumonji, AT rich intera...    28   5.4  

>U57592-1|AAC50822.1| 1266|Homo sapiens jumonji putative protein
           protein.
          Length = 1266

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 13  LPYLQVPNNNIRTVGLANNITRSVEHLPFVVYSHTG 48
           +P + +P  NI  V   +  +R   HLP++ Y HTG
Sbjct: 909 VPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTG 944


>BC046246-1|AAH46246.1| 1246|Homo sapiens jumonji, AT rich
           interactive domain 2 protein.
          Length = 1246

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 13  LPYLQVPNNNIRTVGLANNITRSVEHLPFVVYSHTG 48
           +P + +P  NI  V   +  +R   HLP++ Y HTG
Sbjct: 909 VPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTG 944


>BC046184-1|AAH46184.1|  369|Homo sapiens JARID2 protein protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 13 LPYLQVPNNNIRTVGLANNITRSVEHLPFVVYSHTG 48
          +P + +P  NI  V   +  +R   HLP++ Y HTG
Sbjct: 32 VPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTG 67


>AL136162-1|CAI15719.1| 1246|Homo sapiens Jumonji, AT rich
           interactive domain 2 protein.
          Length = 1246

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 13  LPYLQVPNNNIRTVGLANNITRSVEHLPFVVYSHTG 48
           +P + +P  NI  V   +  +R   HLP++ Y HTG
Sbjct: 909 VPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTG 944


>AL021938-1|CAI19873.1| 1246|Homo sapiens Jumonji, AT rich
           interactive domain 2 protein.
          Length = 1246

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 13  LPYLQVPNNNIRTVGLANNITRSVEHLPFVVYSHTG 48
           +P + +P  NI  V   +  +R   HLP++ Y HTG
Sbjct: 909 VPGVTIPWLNIGMVFSTSCWSRDQNHLPYIDYLHTG 944


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,932,111
Number of Sequences: 224733
Number of extensions: 218372
Number of successful extensions: 286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 5
length of query: 53
length of database: 73,234,838
effective HSP length: 33
effective length of query: 20
effective length of database: 65,818,649
effective search space: 1316372980
effective search space used: 1316372980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)