GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002255-TA|BGIBMGA002255-PA|undefined
         (53 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-3364|ABI31327.1| 1002|Drosophila melanogaster CG8681-PB...    27   4.2  
X54360-1|CAA38244.1| 1377|Drosophila melanogaster protein ( Dros...    26   7.3  
U66884-1|AAC47752.1| 1397|Drosophila melanogaster cubitus interr...    26   7.3  
M94285-1|AAA82939.1|  457|Drosophila melanogaster gastrulation-a...    26   7.3  
BT024198-1|ABC86260.1|  857|Drosophila melanogaster RE55588p pro...    26   7.3  
AY089534-1|AAL90272.1|  457|Drosophila melanogaster LD04530p pro...    26   7.3  
AE014135-3|AAF59373.2| 1397|Drosophila melanogaster CG2125-PA pr...    26   7.3  
AE014134-3629|EAA46036.2|  457|Drosophila melanogaster CG17678-P...    26   7.3  

>AE014134-3364|ABI31327.1| 1002|Drosophila melanogaster CG8681-PB,
          isoform B protein.
          Length = 1002

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 26 VGLANNITRSVEHLPFVVYSHTGD 49
          V  AN + R+VE +P VVY++T D
Sbjct: 46 VDRANILERNVELVPIVVYANTDD 69


>X54360-1|CAA38244.1| 1377|Drosophila melanogaster protein (
            Drosophila ciD (cubitusinterruptus Dominant) locus mRNA.
            ).
          Length = 1377

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 2    SESHLRNFQDKLPYLQVPNNNIRTVGLANNITRSVEHLPFVVYSHTGDPDV 52
            S  HL  +Q  L Y+Q   N + T    N  T  ++ LP +  ++T  PDV
Sbjct: 1314 SVMHLDTYQRTLEYVQSCQNWMET---NNTSTNQIQSLPGMPVNNTLFPDV 1361


>U66884-1|AAC47752.1| 1397|Drosophila melanogaster cubitus interruptus
            dominant proteinprotein.
          Length = 1397

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 2    SESHLRNFQDKLPYLQVPNNNIRTVGLANNITRSVEHLPFVVYSHTGDPDV 52
            S  HL  +Q  L Y+Q   N + T    N  T  ++ LP +  ++T  PDV
Sbjct: 1315 SVMHLDTYQRTLEYVQSCQNWMET---NNTSTNQIQSLPGMPVNNTLFPDV 1362


>M94285-1|AAA82939.1|  457|Drosophila melanogaster
          gastrulation-associated protein protein.
          Length = 457

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 16 LQVPNNNIRTVGLANNI 32
          + +PNNN+ T G+ NNI
Sbjct: 14 ISIPNNNVITNGVENNI 30


>BT024198-1|ABC86260.1|  857|Drosophila melanogaster RE55588p
           protein.
          Length = 857

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 2   SESHLRNFQDKLPYLQVPNNNIRTVGLANNITRSVEHLPFVVYSHTGDPDV 52
           S  HL  +Q  L Y+Q   N + T    N  T  ++ LP +  ++T  PDV
Sbjct: 775 SVMHLDTYQRTLEYVQSCQNWMET---NNTSTNQIQSLPGMPVNNTLFPDV 822


>AY089534-1|AAL90272.1|  457|Drosophila melanogaster LD04530p
          protein.
          Length = 457

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 16 LQVPNNNIRTVGLANNI 32
          + +PNNN+ T G+ NNI
Sbjct: 14 ISIPNNNVITNGVENNI 30


>AE014135-3|AAF59373.2| 1397|Drosophila melanogaster CG2125-PA
            protein.
          Length = 1397

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 2    SESHLRNFQDKLPYLQVPNNNIRTVGLANNITRSVEHLPFVVYSHTGDPDV 52
            S  HL  +Q  L Y+Q   N + T    N  T  ++ LP +  ++T  PDV
Sbjct: 1315 SVMHLDTYQRTLEYVQSCQNWMET---NNTSTNQIQSLPGMPVNNTLFPDV 1362


>AE014134-3629|EAA46036.2|  457|Drosophila melanogaster CG17678-PA
          protein.
          Length = 457

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 16 LQVPNNNIRTVGLANNI 32
          + +PNNN+ T G+ NNI
Sbjct: 14 ISIPNNNVITNGVENNI 30


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,565
Number of Sequences: 52641
Number of extensions: 83588
Number of successful extensions: 326
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 8
length of query: 53
length of database: 24,830,863
effective HSP length: 34
effective length of query: 19
effective length of database: 23,041,069
effective search space: 437780311
effective search space used: 437780311
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)