GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002255-TA|BGIBMGA002255-PA|undefined
         (53 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   2.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    19   4.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    18   8.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    18   8.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    18   8.4  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.2 bits (40), Expect = 2.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 9   FQDKLPYLQVPNNNIRTVGLANN 31
           F  +L    V  N +   GLANN
Sbjct: 301 FDSQLTVKAVSKNGVLLFGLANN 323


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 16  LQVPNNNIRTVGLANNITRSVEHLP 40
           +++PN  + T   + + T   +HLP
Sbjct: 360 MEIPNVTLPTSTYSGSPTELPKHLP 384


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic
          acetylcholine receptor beta2subunit protein.
          Length = 427

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 35 SVEHLPFVVYSHTGD 49
          S++H     YSHT D
Sbjct: 67 SIQHYNVDEYSHTVD 81


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 21  NNIRTVGLANNITRSVEHLPFVVYSH 46
           NN++ + L +N  R ++   F   SH
Sbjct: 842 NNLQILHLEDNRIRELKGFEFERLSH 867


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 23  IRTVGLANNITRSVEHLPFVVYSHT 47
           +RT  +  +     EHL ++++S T
Sbjct: 188 VRTEEVPEDKCPFTEHLGYLIFSST 212


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,934
Number of Sequences: 429
Number of extensions: 497
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 53
length of database: 140,377
effective HSP length: 33
effective length of query: 20
effective length of database: 126,220
effective search space:  2524400
effective search space used:  2524400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)