GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002254-TA|BGIBMGA002254-PA|undefined
         (189 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    31   0.14 
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    26   3.0  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   5.3  
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc...    25   5.3  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    25   5.3  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   7.0  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    25   7.0  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   7.0  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   7.0  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    25   9.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.3  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   9.3  

>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 4/101 (3%)

Query: 65  SNNEKEDFVINDIINANRHGFSHEVDHPKNVPNYFTVDNVKHNTESANDDAAYILYHLLR 124
           S++ + D ++N I+      F+ E D      NY  ++    N+  +   +  ILY  L+
Sbjct: 99  SSSFQNDQLLNVILEDQ---FATEKDSDNGAVNYGALEAAL-NSLMSQVTSKEILYEPLK 154

Query: 125 NTNNNDHSDFKEAKDSLRSALRARCQKVEHCVRKCQKKQID 165
           +   N     K AK++ +     + QK++ C++  +  + D
Sbjct: 155 DLEANYPKFLKNAKETEKQGFEEQYQKIQKCIQIFESPEYD 195


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 98  YFTVDNVKHNTESANDDAAYILYHLLRNTNN 128
           + TV+NV+H   S N D    L  LL+N  N
Sbjct: 70  HVTVENVQHPASSPNLDLLQGLGELLKNEEN 100


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 75  NDIINANRHGFSHEVDHPKNVPNY-----FTVDNVKHNTESANDDAAYILYHLLRNTNNN 129
           N  +N N      E + P N PN       T     HN  S+  + A   Y+  R  +N+
Sbjct: 249 NAYVNNNPSSSRRESESPANSPNITSSAGMTHAQPTHNPTSSYGNGASTNYNASRPPSNH 308

Query: 130 DHS 132
            HS
Sbjct: 309 PHS 311


>SPBC1709.12 |rid1||GTPase binding protein
          Rid1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 13 SVKINSDDKSDSIFFVVPKEPGFD 36
          S  +NS D+ DS+ F  P  P  D
Sbjct: 22 SESVNSSDREDSLSFQTPSTPSED 45


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 116 AYILYHLLRNTNNNDHSDFKEAKDSLRSALRARCQKVEHCVRK 158
           A +L    +     +HS   +A+D+++SALR R ++ E  V+K
Sbjct: 127 ARVLSRSKKQEERENHSS--DARDAIKSALRRRMRRREGRVQK 167


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/33 (30%), Positives = 21/33 (63%)

Query: 2   SNTHGELANVASVKINSDDKSDSIFFVVPKEPG 34
           ++THGE  + +++ I+     D+++FV P + G
Sbjct: 140 NSTHGEFYSDSTLNISYLSDDDTVWFVEPIDGG 172


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 151 KVEHCVRKCQKKQIDCPIN 169
           KVE CV+ C+++Q+   I+
Sbjct: 382 KVEKCVQSCEERQLQATIS 400


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 125 NTNNNDHSDFKEAKDSLRSALRARCQKVEHCVRKCQKKQIDCPINCKESYDEFNICPSEK 184
           NTNNN   D +    +LR  L     KV+  V +      D PI  K    + + CP+ +
Sbjct: 121 NTNNNHLDDIQCCAKNLRLRLELAMYKVQ--VNQTFSPLQDLPIVAK---TKLHNCPNSE 175

Query: 185 P 185
           P
Sbjct: 176 P 176


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 78  INANRHGFSHEVDHPKNVPNYFTVDNVKHNTESAN 112
           IN    G  +EVD+  N       DNV+ N E A+
Sbjct: 74  INKGEDGNENEVDNVNNNDKKEDEDNVEENEEEAD 108


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 139 DSLRSALRARCQKV--EHCVRKCQKKQIDCPI-NCKESYDEFNICP 181
           D  +S   A+C  +    C ++ +KK + CP+ +C++   +  I P
Sbjct: 157 DEKKSIFAAKCGHLFCSTCAKELRKKTVPCPVQHCRKRITKKFIFP 202


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 74   INDIINANRHGFSHEVDHPKNVPNYFTVDNVKHNTESANDDAAYILYHLLRNTNNNDHSD 133
            I++   A++H    E   P+ V N      + +NTE   D +A     + RN  N   +D
Sbjct: 1636 ISNGTRASKHANEKENTFPRGVENNLVAPMIPNNTELNEDTSA-----VSRNLENAT-ND 1689

Query: 134  FKEAKDSLRSALRARCQ 150
             KE   +  +   AR +
Sbjct: 1690 LKETFPTTTTISTARAK 1706


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 65  SNNEKEDFVINDIINANRHGFS-----HEVDHPKNVPNYFTVDNVKHNTESANDDAAYIL 119
           SN EK    +ND ++  R+ ++     H+    + V N     N    T+S++D      
Sbjct: 25  SNEEKPLIDLNDSLDEQRNAYNEHCKNHDQQPSQQVRNMEDEANQYEQTDSSSDQEVMNE 84

Query: 120 YHLLRNTNNNDH 131
              L   N ND+
Sbjct: 85  KQSLDKENRNDN 96


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 922,595
Number of Sequences: 5004
Number of extensions: 37719
Number of successful extensions: 94
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 13
length of query: 189
length of database: 2,362,478
effective HSP length: 69
effective length of query: 120
effective length of database: 2,017,202
effective search space: 242064240
effective search space used: 242064240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)