Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002254-TA|BGIBMGA002254-PA|undefined
(189 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 31 0.44
12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837 31 0.77
05_03_0414 + 13650483-13651388,13651559-13651657 31 0.77
04_01_0600 + 7907142-7908047,7908218-7908316 31 0.77
04_01_0595 + 7840842-7841345,7841518-7841748,7841919-7842017 31 0.77
11_01_0295 + 2217496-2218092,2218774-2218876,2219140-2219249,221... 29 3.1
02_04_0539 - 23745936-23746097,23746661-23747566 28 4.1
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296 27 7.2
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 27 7.2
08_01_0626 - 5445676-5446687,5447099-5447430 27 9.5
>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 5 HGELANVASVKINSDDKSDSIFFVVPKEPGFDSHLSSDITY 45
H EL+++AS+ INS + ++F + P E G S SS +++
Sbjct: 1059 HDELSSLASLSINSCPNTTTLFLIEPSETG--SSRSSSVSF 1097
>12_01_0519 - 4102251-4102352,4102522-4103439,4104763-4104837
Length = 364
Score = 30.7 bits (66), Expect = 0.77
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 154 HCVRKCQKKQIDCPINCKESYDEFNI 179
HCV C + + CP C S+ E N+
Sbjct: 268 HCVTVCPMRPMKCPFGCDSSFPERNL 293
>05_03_0414 + 13650483-13651388,13651559-13651657
Length = 334
Score = 30.7 bits (66), Expect = 0.77
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 154 HCVRKCQKKQIDCPINCKESYDEFNI 179
HCV C + + CP C S+ E N+
Sbjct: 239 HCVTVCPMRPMKCPFGCDSSFPERNL 264
>04_01_0600 + 7907142-7908047,7908218-7908316
Length = 334
Score = 30.7 bits (66), Expect = 0.77
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 154 HCVRKCQKKQIDCPINCKESYDEFNI 179
HCV C + + CP C S+ E N+
Sbjct: 239 HCVTVCPMRPMKCPFGCDSSFPERNL 264
>04_01_0595 + 7840842-7841345,7841518-7841748,7841919-7842017
Length = 277
Score = 30.7 bits (66), Expect = 0.77
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 154 HCVRKCQKKQIDCPINCKESYDEFNI 179
HCV C + + CP C S+ E N+
Sbjct: 182 HCVTVCPMRPMKCPFGCDSSFPERNL 207
>11_01_0295 +
2217496-2218092,2218774-2218876,2219140-2219249,
2219328-2219399,2219653-2219814,2220300-2220510,
2220613-2220948,2221050-2221162
Length = 567
Score = 28.7 bits (61), Expect = 3.1
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 13/119 (10%)
Query: 78 INANRHGFSHEVDHPKNVPNYFTVDNV----KHNTESANDDAAYILYHLLRNTNNNDHSD 133
+++++ G+S +N+ N T D+V H+ +SA+D YH LR + S
Sbjct: 205 MSSDQEGWSLFTSVSENLNNVQTTDHVGTHENHSIKSASDRILIDFYHKLREESLTVISQ 264
Query: 134 F-KEAKDSLRSALRAR-----CQKVEHCVRKCQKKQIDCPIN---CKESYDEFNICPSE 183
+ K+ K+S ++++ + + E +++ K+ D + CK+ + ++C SE
Sbjct: 265 YKKDLKESQKNSMLSDEKNEVMTETEREIQEICKELQDSSLAKGFCKDEHPSKDVCISE 323
>02_04_0539 - 23745936-23746097,23746661-23747566
Length = 355
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 148 RCQKVEHCVRKCQKKQIDCP---INCKESYDE 176
RC+ HC C K I+CP + C+ ++ +
Sbjct: 230 RCEMDRHCASVCPMKLINCPFYQVGCESAFPQ 261
>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
Length = 247
Score = 27.5 bits (58), Expect = 7.2
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 137 AKDSLRSALRARCQKVEHCVRKCQKKQIDCPINCKESYDEFNICPSE 183
A+D AL C H +C K + C NCKE N CP+E
Sbjct: 51 ARDCPNVALCHACGLPGHIAAECSSKDL-C-WNCKEPGHMANSCPNE 95
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 74 INDIINANRHGFSHEVDHPKNVPNYFTVDNVKHNTESANDDAAYILYHL--LRNTNNNDH 131
I D+ N G ++D ++ N T+D + +N ++ Y +L LR NN H
Sbjct: 1433 ILDLKFNNLSGDLGKIDF-SSLSNLTTIDLLVNNFSGTVPESIYACTNLIVLRIARNNFH 1491
Query: 132 SDFKEAKDSLRS 143
+F + + LRS
Sbjct: 1492 GEFSQTMNRLRS 1503
>08_01_0626 - 5445676-5446687,5447099-5447430
Length = 447
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 145 LRARCQKVEHCVRKCQKKQIDCP 167
LRARC K++H Q ++ CP
Sbjct: 347 LRARCAKIKHAWLPRQSPRVHCP 369
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.391
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,140,370
Number of Sequences: 37544
Number of extensions: 184421
Number of successful extensions: 288
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 10
length of query: 189
length of database: 14,793,348
effective HSP length: 78
effective length of query: 111
effective length of database: 11,864,916
effective search space: 1317005676
effective search space used: 1317005676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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