GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002254-TA|BGIBMGA002254-PA|undefined
         (189 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036685-1|AAB88308.2|  369|Caenorhabditis elegans Lateral-signa...    27   6.4  
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF036685-1|AAB88308.2|  369|Caenorhabditis elegans
           Lateral-signal-induced phosphataseprotein 1 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 82  RHGFSHEVDHPKNVPNYFTVD-NVKHNTESANDDAAYIL 119
           ++  SH ++   N+PN F  D N+++   SA+D+A++ L
Sbjct: 208 KYSISHVINVTSNLPNTFEEDPNMRYLRISADDNASHNL 246


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 125 NTNNNDHSDFKEAKDSLRSALRARCQKVEHCVRKCQKKQ 163
           N NNN+++   + +  L++AL  R  KV H V + ++++
Sbjct: 861 NNNNNNNNSTTDFQMDLKNALAKRRSKVAHDVDEDEERE 899


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 125 NTNNNDHSDFKEAKDSLRSALRARCQKVEHCVRKCQKKQ 163
           N NNN+++   + +  L++AL  R  KV H V + ++++
Sbjct: 861 NNNNNNNNSTTDFQMDLKNALAKRRSKVAHDVDEDEERE 899


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.131    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,961,550
Number of Sequences: 27539
Number of extensions: 200019
Number of successful extensions: 384
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 3
length of query: 189
length of database: 12,573,161
effective HSP length: 77
effective length of query: 112
effective length of database: 10,452,658
effective search space: 1170697696
effective search space used: 1170697696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)