GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002253-TA|BGIBMGA002253-PA|undefined
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    31   0.13 
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc...    27   1.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.6  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   6.4  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   8.5  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    25   8.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 48  VVLFVQLAFGLVAASLAILNATKNPTEPIFGLPGCLWANVLTALLGSIV 96
           V + +  AFG+V+  +  L       +PIFG  G LWA +  ALLG +V
Sbjct: 250 VYILIMPAFGVVSHIIPSL-----AHKPIFGKEGMLWAMLSIALLGLMV 293


>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
           Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1062

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 85  ANVLTALLGSIVLLIFGIYWLVSGLKDHLAI 115
           AN+LT   G+I L  FG+   ++ L+DH  +
Sbjct: 135 ANILTTKDGTIKLADFGVATKINALEDHSVV 165


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 24   RDHLRRLIVYPPPVLSYAVYIAVIVVLFVQLAFGLVAASLAI 65
            ++ LRR IV     L ++++IA  V+L +   FG  AA  ++
Sbjct: 1666 QNKLRRQIVLRYATLYFSLFIAFFVLLILPFVFGKSAAGTSM 1707


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 152 LRSYLLERDPPPPTIKVDNHSDGTIFLY 179
           L S L   D P P   +DN++D   F Y
Sbjct: 193 LSSTLARLDRPAPNYGIDNYNDFNTFYY 220


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 97  LLIFGIYWLVSGLKDHLAIS-YIALGLFVPGPSLGYSYWILITSVLCNLINVCLIRL 152
           L+  GIY  V+  +  L  S Y  L L      +  S WI + ++L  L N+ +IRL
Sbjct: 533 LVYQGIYRYVNNPERFLGCSAYWGLAL------ISSSAWIFLIAILAQLSNLAIIRL 583


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 44  IAVIVVLFVQLAFGLVAASLAILNATKNPTEPIFGLPGCLWANVLTALLGSIVLLIFGIY 103
           IA+ + LFV L  GL+  S  ++ A      P+  +   + A V+  +  ++V +++  +
Sbjct: 124 IAIYICLFVLLLLGLIYCSKIVVKAI-----PLISI---VIAAVVVIIAVAMVKILYICH 175

Query: 104 WLV 106
           WL+
Sbjct: 176 WLI 178


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.329    0.146    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 839,639
Number of Sequences: 5004
Number of extensions: 31982
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 6
length of query: 179
length of database: 2,362,478
effective HSP length: 69
effective length of query: 110
effective length of database: 2,017,202
effective search space: 221892220
effective search space used: 221892220
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)