GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002253-TA|BGIBMGA002253-PA|undefined
         (179 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0550 + 22023120-22023422                                         29   2.1  
05_03_0670 + 16819189-16819481,16821687-16821803,16822073-168221...    28   3.7  
02_05_1054 + 33788244-33788511,33792010-33792117,33792199-337922...    28   3.7  
02_05_0587 + 30162806-30163183,30163315-30163478,30163571-301636...    28   3.7  
08_02_0962 - 23064922-23064952,23065045-23065175,23066839-230668...    28   4.9  
02_05_1257 + 35286153-35286599,35286679-35287229,35287608-352878...    28   4.9  

>06_03_0550 + 22023120-22023422
          Length = 100

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 113 LAISYIALGLFVPGPSLGYSYWILITSVLCNLINVCLIRLRSYLLERDPPPPTIKVDNHS 172
           LA SY+ LG F+    L     + ITS++  L+  C+   RS LL+  P P   ++    
Sbjct: 40  LAASYVVLGYFL---MLAAFVLLAITSLVFLLLRHCVPSGRSDLLDGQPEPEEARLKAME 96

Query: 173 D 173
           D
Sbjct: 97  D 97


>05_03_0670 +
           16819189-16819481,16821687-16821803,16822073-16822136,
           16822566-16822724,16823014-16823165,16825137-16825272
          Length = 306

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 37  VLSYAVYIAVIVVLFVQLAFGLVAASLAILNATKNPT-EPIFGLPGCLWANVLTALLGSI 95
           ++    +I  ++    +LA    A  + +L    +     +F  P   WA VLT L GS+
Sbjct: 124 LIPIVTFIIAVIFRAEKLAIASCAGKMKVLGTVLSAKLAKVF--PSKYWATVLTCLSGSL 181

Query: 96  VLLIFGI 102
             L+ G+
Sbjct: 182 QALVAGV 188


>02_05_1054 +
          33788244-33788511,33792010-33792117,33792199-33792294,
          33792406-33792498,33792598-33792683,33793009-33793433,
          33793534-33793629,33793731-33793836,33793942-33794085
          Length = 473

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 23 DRDHLRRLIVYPPPVLS-YAVYIAVIVVLFVQLAFGLVAASLAILNATKNPTEPIFGLPG 81
          +RD +  L   PP   + YA Y+AV       L + L  A+ A   ATK     + G PG
Sbjct: 33 ERDRVEALPGQPPVAFAQYAGYVAVSEASGRALFYWLTEAAAAAAAATKPLVLWLNGGPG 92

Query: 82 C 82
          C
Sbjct: 93 C 93


>02_05_0587 +
           30162806-30163183,30163315-30163478,30163571-30163654,
           30163737-30163794,30164092-30164145,30164244-30164309,
           30164310-30164381,30164547-30164627,30165361-30165533,
           30165916-30166018,30166148-30166279,30166432-30166554,
           30166898-30167002,30167397-30167722,30167919-30168258,
           30169973-30170113,30170589-30170801,30170901-30171119,
           30171272-30171619,30171711-30172043,30172548-30172601
          Length = 1188

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 20  DINDRDHLRRLIVYPPPVLSYAVYIAVIVVLFVQLAFGLVAASLAILN 67
           D+ DR   +   ++P  V +   +     +LF +LAF L+A  + +LN
Sbjct: 212 DLRDRIFSKHSDLFPEEVYNLETFRWSFGILFSRLAFALLAVDVILLN 259


>08_02_0962 -
           23064922-23064952,23065045-23065175,23066839-23066864,
           23067176-23067311
          Length = 107

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 111 DHLAISYIALGLFVPGPSLGYSYWILITSVLCNLINVCLI 150
           D+LA+    LG  V G   G  +W  + +V+C+ + V  +
Sbjct: 2   DNLALLRGILGPGVAGAVFGVGWWFWVDAVVCSAVQVSFL 41


>02_05_1257 +
           35286153-35286599,35286679-35287229,35287608-35287872,
           35288267-35288359,35288469-35288555,35288658-35288750
          Length = 511

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 45  AVIVVLFVQLAFGLVAASLAILNATKNPTEPIF 77
           AV+VVL   LAFGL+A  + ++ AT+N    IF
Sbjct: 370 AVVVVLVQSLAFGLLA--MVLILATRNHFAVIF 400


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.329    0.146    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,770,411
Number of Sequences: 37544
Number of extensions: 226569
Number of successful extensions: 651
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 6
length of query: 179
length of database: 14,793,348
effective HSP length: 78
effective length of query: 101
effective length of database: 11,864,916
effective search space: 1198356516
effective search space used: 1198356516
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 57 (27.1 bits)