GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002253-TA|BGIBMGA002253-PA|undefined
         (179 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC127863-1|AAI27864.1|  232|Homo sapiens CLRN2 protein protein.        43   7e-04
BX640823-1|CAE45899.1|  150|Homo sapiens hypothetical protein pr...    41   0.003
BC029478-1|AAH29478.1|  226|Homo sapiens clarin 3 protein.             41   0.003
AL158166-1|CAI14770.1|  226|Homo sapiens transmembrane protein 1...    41   0.003
BC074971-1|AAH74971.1|  232|Homo sapiens clarin 1 protein.             36   0.10 
BC074970-1|AAH74970.1|  232|Homo sapiens clarin 1 protein.             36   0.10 
AF495717-1|AAM88774.1|  232|Homo sapiens clarin-1 protein.             36   0.10 
AF482697-1|AAN07148.1|  232|Homo sapiens Usher syndrome type III...    36   0.10 
AL512764-1|CAC21681.1|  793|Homo sapiens hypothetical protein pr...    31   1.7  
BC112203-1|AAI12204.1|  311|Homo sapiens MAS-related GPR, member...    31   3.0  
BC104889-1|AAI04890.1|  311|Homo sapiens MAS-related GPR, member...    31   3.0  
AB037821-1|BAA92638.1| 1093|Homo sapiens KIAA1400 protein protein.     30   5.2  

>BC127863-1|AAI27864.1|  232|Homo sapiens CLRN2 protein protein.
          Length = 232

 Score = 42.7 bits (96), Expect = 7e-04
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 3/117 (2%)

Query: 38  LSYAVYIAVIVVLFVQLAFGLVAASLAILNATKNPTEPIFGLPG-CLWANVLTALLGSIV 96
           L+  +++ ++++LF+ LA  LV+   AILN  + P   + G  G CLW NVL   + ++ 
Sbjct: 93  LNAGLHVMILLLLFLALALALVSMGFAILNMIQVPYRAVSGPGGICLW-NVLAGGVVALA 151

Query: 97  LLIFGIYWLVSGLKDHLAISYIALGLF-VPGPSLGYSYWILITSVLCNLINVCLIRL 152
           +  F        L + +A     L  F V       S+WI + S   +  N+ ++ +
Sbjct: 152 IASFVAAVKFHDLTERIANFQEKLFQFVVVEEQYEESFWICVASASAHAANLVVVAI 208


>BX640823-1|CAE45899.1|  150|Homo sapiens hypothetical protein
           protein.
          Length = 150

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 42  VYIAVIVVLFVQLAFGLVAASLAILNATKNPTEPIFGLPGCLWANVLTALLGSIVLLIFG 101
           ++   I+ L + L   L+++     N+  NP +   G  G    N L A    + +++F 
Sbjct: 13  LHSVTILFLVLSLITSLLSSGFTFYNSISNPYQTFLGPTGVYTWNGLGASFVFVTMILFV 72

Query: 102 IYWLVSGLKDHL-AISYIALGLFVPGPSLGYSYWILITSVLCNLINVCLI 150
                + L + L  + Y A        S GYS+W+++  +L N++ V +I
Sbjct: 73  ANTQSNQLSEELFQMLYPATTSKGTTHSYGYSFWLILLVILLNIVTVTII 122


>BC029478-1|AAH29478.1|  226|Homo sapiens clarin 3 protein.
          Length = 226

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 42  VYIAVIVVLFVQLAFGLVAASLAILNATKNPTEPIFGLPGCLWANVLTALLGSIVLLIFG 101
           ++   I+ L + L   L+++     N+  NP +   G  G    N L A    + +++F 
Sbjct: 89  LHSVTILFLVLSLITSLLSSGFTFYNSISNPYQTFLGPTGVYTWNGLGASFVFVTMILFV 148

Query: 102 IYWLVSGLKDHL-AISYIALGLFVPGPSLGYSYWILITSVLCNLINVCLI 150
                + L + L  + Y A        S GYS+W+++  +L N++ V +I
Sbjct: 149 ANTQSNQLSEELFQMLYPATTSKGTTHSYGYSFWLILLVILLNIVTVTII 198


>AL158166-1|CAI14770.1|  226|Homo sapiens transmembrane protein 12
           protein.
          Length = 226

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 42  VYIAVIVVLFVQLAFGLVAASLAILNATKNPTEPIFGLPGCLWANVLTALLGSIVLLIFG 101
           ++   I+ L + L   L+++     N+  NP +   G  G    N L A    + +++F 
Sbjct: 89  LHSVTILFLVLSLITSLLSSGFTFYNSISNPYQTFLGPTGVYTWNGLGASFVFVTMILFV 148

Query: 102 IYWLVSGLKDHL-AISYIALGLFVPGPSLGYSYWILITSVLCNLINVCLI 150
                + L + L  + Y A        S GYS+W+++  +L N++ V +I
Sbjct: 149 ANTQSNQLSEELFQMLYPATTSKGTTHSYGYSFWLILLVILLNIVTVTII 198


>BC074971-1|AAH74971.1|  232|Homo sapiens clarin 1 protein.
          Length = 232

 Score = 35.5 bits (78), Expect = 0.10
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 29  RLIVYPPPVLSYAVYIAVIVVLF--VQLAFGLVAASLAILNATKNPTEPIFGLPGCLWAN 86
           R   +P  + +  V I V V+LF  + +   +V  +  + NA   P E + G  G    +
Sbjct: 82  RFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLS 141

Query: 87  VLTALLGSIVLLIFGIYWLVSGLKDHLAISYIALGLFVPGPSLGY--SYWILITSVLCNL 144
            ++   G +V+++F     +  L + +A +Y          S  Y  S+W++      + 
Sbjct: 142 FISGSCGCLVMILFASEVKIHHLSEKIA-NYKEGTYVYKTQSEKYTTSFWVIFFCFFVHF 200

Query: 145 INVCLIRLRSY 155
           +N  LIRL  +
Sbjct: 201 LNGLLIRLAGF 211


>BC074970-1|AAH74970.1|  232|Homo sapiens clarin 1 protein.
          Length = 232

 Score = 35.5 bits (78), Expect = 0.10
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 29  RLIVYPPPVLSYAVYIAVIVVLF--VQLAFGLVAASLAILNATKNPTEPIFGLPGCLWAN 86
           R   +P  + +  V I V V+LF  + +   +V  +  + NA   P E + G  G    +
Sbjct: 82  RFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLS 141

Query: 87  VLTALLGSIVLLIFGIYWLVSGLKDHLAISYIALGLFVPGPSLGY--SYWILITSVLCNL 144
            ++   G +V+++F     +  L + +A +Y          S  Y  S+W++      + 
Sbjct: 142 FISGSCGCLVMILFASEVKIHHLSEKIA-NYKEGTYVYKTQSEKYTTSFWVIFFCFFVHF 200

Query: 145 INVCLIRLRSY 155
           +N  LIRL  +
Sbjct: 201 LNGLLIRLAGF 211


>AF495717-1|AAM88774.1|  232|Homo sapiens clarin-1 protein.
          Length = 232

 Score = 35.5 bits (78), Expect = 0.10
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 29  RLIVYPPPVLSYAVYIAVIVVLF--VQLAFGLVAASLAILNATKNPTEPIFGLPGCLWAN 86
           R   +P  + +  V I V V+LF  + +   +V  +  + NA   P E + G  G    +
Sbjct: 82  RFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLS 141

Query: 87  VLTALLGSIVLLIFGIYWLVSGLKDHLAISYIALGLFVPGPSLGY--SYWILITSVLCNL 144
            ++   G +V+++F     +  L + +A +Y          S  Y  S+W++      + 
Sbjct: 142 FISGSCGCLVMILFASEVKIHHLSEKIA-NYKEGTYVYKTQSEKYTTSFWVIFFCFFVHF 200

Query: 145 INVCLIRLRSY 155
           +N  LIRL  +
Sbjct: 201 LNGLLIRLAGF 211


>AF482697-1|AAN07148.1|  232|Homo sapiens Usher syndrome type III
           protein.
          Length = 232

 Score = 35.5 bits (78), Expect = 0.10
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 29  RLIVYPPPVLSYAVYIAVIVVLF--VQLAFGLVAASLAILNATKNPTEPIFGLPGCLWAN 86
           R   +P  + +  V I V V+LF  + +   +V  +  + NA   P E + G  G    +
Sbjct: 82  RFSFFPDLLKAIPVSIHVNVILFSAILIVLTMVGTAFFMYNAFGKPFETLHGPLGLYLLS 141

Query: 87  VLTALLGSIVLLIFGIYWLVSGLKDHLAISYIALGLFVPGPSLGY--SYWILITSVLCNL 144
            ++   G +V+++F     +  L + +A +Y          S  Y  S+W++      + 
Sbjct: 142 FISGSCGCLVMILFASEVKIHHLSEKIA-NYKEGTYVYKTQSEKYTTSFWVIFFCFFVHF 200

Query: 145 INVCLIRLRSY 155
           +N  LIRL  +
Sbjct: 201 LNGLLIRLAGF 211


>AL512764-1|CAC21681.1|  793|Homo sapiens hypothetical protein
           protein.
          Length = 793

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 65  ILNATKNPTEPIFGLPGCLWANVLT-ALLGSIVLLIFGIYWLVSGLKDHL-AISYIALGL 122
           +L A   PTE   G   C   ++L   LL +++  +   +    GLKD + A+ ++ALG 
Sbjct: 531 VLFACVPPTEYCHGW-ACFGVSILVIGLLTALIGDLASHFGCTVGLKDSVNAVVFVALGT 589

Query: 123 FVPGPSLG 130
            +PG +LG
Sbjct: 590 SIPGNTLG 597


>BC112203-1|AAI12204.1|  311|Homo sapiens MAS-related GPR, member E
           protein.
          Length = 311

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 46  VIVVLFVQLAFGLVAASLAIL-NATKNPTEPI-FGLPGCLWANVLTALLGSIVLLIFGIY 103
           V  VL   L   +  ASL +L    + P  P   G PG +   +LT LL     L FGIY
Sbjct: 179 VAAVLLALLCCTMCGASLMLLLRVERGPQRPPPRGFPGLI---LLTVLLFLFCGLPFGIY 235

Query: 104 WLVSGL 109
           WL   L
Sbjct: 236 WLSRNL 241


>BC104889-1|AAI04890.1|  311|Homo sapiens MAS-related GPR, member E
           protein.
          Length = 311

 Score = 30.7 bits (66), Expect = 3.0
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 46  VIVVLFVQLAFGLVAASLAIL-NATKNPTEPI-FGLPGCLWANVLTALLGSIVLLIFGIY 103
           V  VL   L   +  ASL +L    + P  P   G PG +   +LT LL     L FGIY
Sbjct: 179 VAAVLLALLCCTMCGASLMLLLRVERGPQRPPPRGFPGLI---LLTVLLFLFCGLPFGIY 235

Query: 104 WLVSGL 109
           WL   L
Sbjct: 236 WLSRNL 241


>AB037821-1|BAA92638.1| 1093|Homo sapiens KIAA1400 protein protein.
          Length = 1093

 Score = 29.9 bits (64), Expect = 5.2
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 74  EPIFGLPGCLWANVLTALLGSIVLLIFGIYWLVSGLKDHL 113
           E I  L GC    +L  LL  IVLL+F + W+V G+   L
Sbjct: 36  EVIGWLTGC--GKLLPFLLEMIVLLLFALLWMVEGVFSQL 73


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.329    0.146    0.460 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,370,496
Number of Sequences: 224733
Number of extensions: 1218264
Number of successful extensions: 8528
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8524
Number of HSP's gapped (non-prelim): 12
length of query: 179
length of database: 73,234,838
effective HSP length: 85
effective length of query: 94
effective length of database: 54,132,533
effective search space: 5088458102
effective search space used: 5088458102
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 62 (29.1 bits)