GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002252-TA|BGIBMGA002252-PA|undefined
         (236 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB71DE Cluster: PREDICTED: similar to huntingtin...    40   0.054
UniRef50_UPI00015B4A4F Cluster: PREDICTED: similar to Huntington...    40   0.072
UniRef50_A4VAL4 Cluster: Huntingtin; n=1; Branchiostoma floridae...    37   0.51 
UniRef50_Q4S7T9 Cluster: Chromosome 18 SCAF14712, whole genome s...    36   0.89 
UniRef50_P42859-2 Cluster: Isoform Short of P42859 ; n=7; Deuter...    35   1.5  
UniRef50_P42858 Cluster: Huntingtin; n=29; Eumetazoa|Rep: Huntin...    35   2.0  

>UniRef50_UPI0000DB71DE Cluster: PREDICTED: similar to huntingtin;
            n=1; Apis mellifera|Rep: PREDICTED: similar to huntingtin
            - Apis mellifera
          Length = 2627

 Score = 39.9 bits (89), Expect = 0.054
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 1    MDPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFLDW 60
            ++P+ L+ S+ER + ++  +++    E + ++   L   L +  PP   L++V+ EFL  
Sbjct: 2440 IEPETLVRSIERTSAIFDKIRRGHSMEVE-LLCTVLSSVLADFFPPLEILTKVIGEFLSP 2498

Query: 61   CRDAER-LNAGVLSDRDRFIECSVMNAEVVFEVFEASIALEQLPV-LSGW 108
             +   R L+A V    +R   C+ M     + VF     ++ LP+ +S W
Sbjct: 2499 QQPHPRLLSAVVFKVCERACTCAQMELLQDWVVFSLPNFIQSLPITMSTW 2548


>UniRef50_UPI00015B4A4F Cluster: PREDICTED: similar to Huntington
            disease gene homolog; n=1; Nasonia vitripennis|Rep:
            PREDICTED: similar to Huntington disease gene homolog -
            Nasonia vitripennis
          Length = 2963

 Score = 39.5 bits (88), Expect = 0.072
 Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 1    MDPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFLDW 60
            ++P++L+ S+ER  +++  +K+    E + I+ A L   L +  PP   L++V+ EFL  
Sbjct: 2776 IEPEILVRSIERSAVIFDKIKKGYPMEVE-ILCAVLSEVLIDFFPPLEILTKVIGEFLSP 2834

Query: 61   CRDAERL-NAGVLSDRDRFIECSVMNAEVVFEVFEASIALEQLP-VLSGW 108
             +   RL +A V    +R    + +     + VF     ++ LP ++S W
Sbjct: 2835 QQPHPRLMSAIVFKICERACNSTQLGLLQTWVVFSIQNFIQSLPLIMSTW 2884


>UniRef50_A4VAL4 Cluster: Huntingtin; n=1; Branchiostoma floridae|Rep:
            Huntingtin - Branchiostoma floridae (Florida lancelet)
            (Amphioxus)
          Length = 3038

 Score = 36.7 bits (81), Expect = 0.51
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 2    DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFLDWC 61
            D + L+ +MER+T+L+  +++    E+ R++   L  FL +  P    +++V+ EFL   
Sbjct: 2849 DNESLIVAMERVTVLFDRIRKGFPCEA-RVVARILPTFLDDFFPAQDIMNKVIGEFLSSQ 2907

Query: 62   RDAERLNAGVLSD 74
            +   +L A VL D
Sbjct: 2908 QPHPQLMAKVLYD 2920


>UniRef50_Q4S7T9 Cluster: Chromosome 18 SCAF14712, whole genome
            shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
            Chromosome 18 SCAF14712, whole genome shotgun sequence -
            Tetraodon nigroviridis (Green puffer)
          Length = 3067

 Score = 35.9 bits (79), Expect = 0.89
 Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 2    DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFL 58
            D + ++ +MER+++L+  +++    E+ R++   L  FL +  PP   +++V+ EFL
Sbjct: 2876 DSESIIVAMERVSVLFDRIRKGLPSEA-RVVSRILPQFLDDFFPPQDVMNKVIGEFL 2931


>UniRef50_P42859-2 Cluster: Isoform Short of P42859 ; n=7;
            Deuterostomia|Rep: Isoform Short of P42859 - Mus musculus
            (Mouse)
          Length = 2639

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 2    DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFL 58
            D + ++ +MER+++L+  +++    E+ R++   L  FL +  PP   +++V+ EFL
Sbjct: 2444 DSESVIVAMERVSVLFDRIRKGFPCEA-RVVARILPQFLDDFFPPQDVMNKVIGEFL 2499


>UniRef50_P42858 Cluster: Huntingtin; n=29; Eumetazoa|Rep: Huntingtin
            - Homo sapiens (Human)
          Length = 3144

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 2    DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFL 58
            D + ++ +MER+++L+  +++    E+ R++   L  FL +  PP   +++V+ EFL
Sbjct: 2949 DSESVIVAMERVSVLFDRIRKGFPCEA-RVVARILPQFLDDFFPPQDIMNKVIGEFL 3004


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,052,530
Number of Sequences: 1657284
Number of extensions: 6269817
Number of successful extensions: 16513
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 16511
Number of HSP's gapped (non-prelim): 6
length of query: 236
length of database: 575,637,011
effective HSP length: 98
effective length of query: 138
effective length of database: 413,223,179
effective search space: 57024798702
effective search space used: 57024798702
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 71 (32.7 bits)