GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002252-TA|BGIBMGA002252-PA|undefined
         (236 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   2.4  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    27   2.4  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    25   7.3  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   7.3  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   9.6  

>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 189 YTTAQLEKLKELC-ERNERLQDLTAFSGSRGTGKP 222
           Y    LE++++L  E  E L+     SGSRG G+P
Sbjct: 197 YYAHNLERIEDLLVEMEENLRPTKKKSGSRGRGRP 231


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 301

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 9  SMERITLLYKTLKQTKERESKRIIVAALKYF 39
          ++E+IT   KT+ QTK   ++R + A+ KY+
Sbjct: 46 NIEKITKTIKTVAQTKLTRAQRAMEASNKYY 76


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 81  CSVMNAEVVFEVFEASIALEQLPVLSGWTFEALGHLLS 118
           CSV + +     + A  A+E  PV  G  F  + H+++
Sbjct: 151 CSVCSGQGFNPKYSADKAIESCPVCGGSGFRVIEHMIA 188


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 188 DYTTAQLEKLKELCERNERLQDLTAFS 214
           D++  Q+E+LKE  +  +RL D T  +
Sbjct: 262 DFSRFQIERLKERNDLTQRLMDFTGMN 288


>SPAC26A3.09c |rga2||GTPase activating protein
          Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 51 SRVVLEFLDWCRDAERLNAGVLSDRDRFIECSVMNAEVVFEV 92
          S++ L    W  + E  N+G++S  +R ++      E+++E+
Sbjct: 57 SKIELNSEIWEDEEEEDNSGIVSQNERLMKLVNKQREIIYEL 98


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 785,356
Number of Sequences: 5004
Number of extensions: 24575
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 5
length of query: 236
length of database: 2,362,478
effective HSP length: 71
effective length of query: 165
effective length of database: 2,007,194
effective search space: 331187010
effective search space used: 331187010
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)