GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002252-TA|BGIBMGA002252-PA|undefined
         (236 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635...    32   0.35 
11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906           29   3.3  
03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478     29   3.3  
05_02_0052 + 6124880-6124956,6125097-6125250,6125327-6125920,612...    29   4.3  
11_02_0015 - 7355989-7357092                                           28   7.6  

>09_04_0627 -
           19061106-19061474,19062067-19062909,19063395-19063501,
           19064301-19064332,19064384-19064663,19065092-19065475,
           19066730-19066803,19067244-19067310,19067415-19067486,
           19067941-19068000,19068683-19068734,19068874-19068943,
           19069110-19069372
          Length = 890

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 13  ITLLYKTLKQTKER--ESKRIIVAALKYFLRETLPPAATLSRVVLEFLDWCRDAERLNA 69
           I+L Y TL   +E   E+ R ++A  +Y +R  +P    L+  VLE   WC D ERL+A
Sbjct: 823 ISLEYITLALRREMILEAHRGVMAIERY-IRGKVPSKVELT--VLELCIWCHDLERLDA 878


>11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906
          Length = 618

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 1   MDPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLP 45
           MD  + +T+  R   ++ TL  T+      II+AA+ +    TLP
Sbjct: 443 MDAKIKVTNDSRTKAMFPTLTNTRSTSLVAIIIAAITFVAAFTLP 487


>03_05_0826 - 27994004-27994966,27995053-27996030,27996101-27996478
          Length = 772

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 178 RLLCVVATHSDYTTAQLEKLKELCERNERLQDLTAFS 214
           RLLC +  HS+      EKL     +N R + L AF+
Sbjct: 140 RLLCPITPHSNTLERAAEKLVRSSRQNARARSLLAFT 176


>05_02_0052 +
           6124880-6124956,6125097-6125250,6125327-6125920,
           6126344-6126757,6126835-6126846
          Length = 416

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 182 VVATHSDYTTAQLEKLKELCERNERLQDLTAFSGSRGTGKPGLGPDD 228
           V+    DY      ++ EL E+N +L +        G G+   GPDD
Sbjct: 281 VLMRAKDYVNVLKARIAELEEKNRKLSESQQLHAGDGDGERDDGPDD 327


>11_02_0015 - 7355989-7357092
          Length = 367

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 45 PPAATLSRVVLEFLDWCRDAERLNAGVLS 73
          PP + L R+ L+ +DW  DA R   G L+
Sbjct: 19 PPMSRLMRLSLKAVDWATDATRRADGTLN 47


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,183,680
Number of Sequences: 37544
Number of extensions: 162462
Number of successful extensions: 448
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 444
Number of HSP's gapped (non-prelim): 5
length of query: 236
length of database: 14,793,348
effective HSP length: 80
effective length of query: 156
effective length of database: 11,789,828
effective search space: 1839213168
effective search space used: 1839213168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)