GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002252-TA|BGIBMGA002252-PA|undefined
         (236 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.067
SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)               30   1.9  
SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)                  28   5.8  
SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)         28   7.7  

>SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 4   DVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFLDWCRD 63
           D L+ +MER+++L+  +++    E+ R++   L   L +  PP   +++V+ EFL   + 
Sbjct: 725 DRLLIAMERVSVLFDRIRKGIPSEA-RVVSRVLPLLLLDFFPPQEIMNKVIGEFLSSQQP 783

Query: 64  AERLNAGVL 72
              L A VL
Sbjct: 784 HPELMAEVL 792


>SB_40761| Best HMM Match : UPF0020 (HMM E-Value=9.5e-06)
          Length = 1176

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 181 CVVATHSDYTTAQLEKLKELCERNERLQDLTAFS 214
           C +A  +  TTAQL K+  L + NE+   L AF+
Sbjct: 375 CGIALANPETTAQLRKISSLTKSNEKDHSLLAFN 408


>SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)
          Length = 1009

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 1   MDPDVLMTSMERITLLYKTLKQTKERESKRIIVAA 35
           + P+++ TS E   L+ K  + T E E+K+ IVAA
Sbjct: 694 LQPELIQTSAETEKLMVKIEQDTVEVEAKKEIVAA 728


>SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)
          Length = 1652

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 37   KYFLRETLPPAATLSRVVLEFLDWCRDAERLNAGV 71
            K++LR  L   + +S  + E LDW    ERLN+ +
Sbjct: 1064 KHYLRRWLKDNSLVSSDIREILDWEYYIERLNSAI 1098


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,912,254
Number of Sequences: 59808
Number of extensions: 185702
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 4
length of query: 236
length of database: 16,821,457
effective HSP length: 80
effective length of query: 156
effective length of database: 12,036,817
effective search space: 1877743452
effective search space used: 1877743452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)