GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002252-TA|BGIBMGA002252-PA|undefined
         (236 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin h...    33   0.26 
AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington d...    33   0.26 
AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington d...    33   0.26 
AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA...    33   0.26 

>AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin
            homolog protein.
          Length = 3584

 Score = 33.5 bits (73), Expect = 0.26
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 18/124 (14%)

Query: 2    DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFLDWC 61
            DP+++    +++ +L   +K +  R++  I    L   +R+ +PP   L++V+ EFL   
Sbjct: 3376 DPEIIAQQNDKVDILLHCIKSST-RDAAWIYGQVLCQIIRDLVPPNEILTKVIKEFL--- 3431

Query: 62   RDAERLNAGVLSDRDRFIECSVMNAEVVFEVFEASIALEQLPVLSGWTFEALGHLLSDKL 121
                 +N            C V+ A +V++VF ++I    L +L  W    L   L    
Sbjct: 3432 ----AIN---------HPHCDVI-AMIVYQVFRSAIDSSYLQMLQDWLICTLPTFLDQPE 3477

Query: 122  SAGV 125
              GV
Sbjct: 3478 QQGV 3481


>AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 33.5 bits (73), Expect = 0.26
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 18/124 (14%)

Query: 2    DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFLDWC 61
            DP+++    +++ +L   +K +  R++  I    L   +R+ +PP   L++V+ EFL   
Sbjct: 3375 DPEIIAQQNDKVDILLHCIKSST-RDAAWIYGQVLCQIIRDLVPPNEILTKVIKEFL--- 3430

Query: 62   RDAERLNAGVLSDRDRFIECSVMNAEVVFEVFEASIALEQLPVLSGWTFEALGHLLSDKL 121
                 +N            C V+ A +V++VF ++I    L +L  W    L   L    
Sbjct: 3431 ----AIN---------HPHCDVI-AMIVYQVFRSAIDSSYLQMLQDWLICTLPTFLDQPE 3476

Query: 122  SAGV 125
              GV
Sbjct: 3477 QQGV 3480


>AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 33.5 bits (73), Expect = 0.26
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 18/124 (14%)

Query: 2    DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFLDWC 61
            DP+++    +++ +L   +K +  R++  I    L   +R+ +PP   L++V+ EFL   
Sbjct: 3375 DPEIIAQQNDKVDILLHCIKSST-RDAAWIYGQVLCQIIRDLVPPNEILTKVIKEFL--- 3430

Query: 62   RDAERLNAGVLSDRDRFIECSVMNAEVVFEVFEASIALEQLPVLSGWTFEALGHLLSDKL 121
                 +N            C V+ A +V++VF ++I    L +L  W    L   L    
Sbjct: 3431 ----AIN---------HPHCDVI-AMIVYQVFRSAIDSSYLQMLQDWLICTLPTFLDQPE 3476

Query: 122  SAGV 125
              GV
Sbjct: 3477 QQGV 3480


>AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA
            protein.
          Length = 3583

 Score = 33.5 bits (73), Expect = 0.26
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 18/124 (14%)

Query: 2    DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKYFLRETLPPAATLSRVVLEFLDWC 61
            DP+++    +++ +L   +K +  R++  I    L   +R+ +PP   L++V+ EFL   
Sbjct: 3375 DPEIIAQQNDKVDILLHCIKSST-RDAAWIYGQVLCQIIRDLVPPNEILTKVIKEFL--- 3430

Query: 62   RDAERLNAGVLSDRDRFIECSVMNAEVVFEVFEASIALEQLPVLSGWTFEALGHLLSDKL 121
                 +N            C V+ A +V++VF ++I    L +L  W    L   L    
Sbjct: 3431 ----AIN---------HPHCDVI-AMIVYQVFRSAIDSSYLQMLQDWLICTLPTFLDQPE 3476

Query: 122  SAGV 125
              GV
Sbjct: 3477 QQGV 3480


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,702,905
Number of Sequences: 52641
Number of extensions: 282557
Number of successful extensions: 776
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 4
length of query: 236
length of database: 24,830,863
effective HSP length: 83
effective length of query: 153
effective length of database: 20,461,660
effective search space: 3130633980
effective search space used: 3130633980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)