GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002252-TA|BGIBMGA002252-PA|undefined
         (236 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z73969-20|CAA98241.1|  643|Caenorhabditis elegans Hypothetical p...    27   8.9  
U80842-8|AAB37951.1|  244|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U21487-1|AAA96949.1|  643|Caenorhabditis elegans ribonucleoprote...    27   8.9  
L41729-1|AAC41575.1|  643|Caenorhabditis elegans Ro ribonucleopr...    27   8.9  
AL021479-7|CAA16325.1|  643|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.7 protein.
          Length = 767

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 4   DVLMTSMERITLLYKTLKQTKERESKRIIVAALKYF 39
           D  ++  +++    K L++TKE +  + I+ ALKYF
Sbjct: 127 DTFLSDFKKLIDAMKALRETKEFKYIKPIITALKYF 162


>Z73969-20|CAA98241.1|  643|Caenorhabditis elegans Hypothetical
           protein C12D8.11 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 2   DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKY--FLRETLPPAATLSRVVLEFL 58
           +  ++     R   L +   + K  +S+ +IVAA+K    +RE LP  +  S++V E L
Sbjct: 319 EEQLIKEEQSRALNLVEAYLKLKNEQSEEVIVAAIKKHGLVREHLPTTSLNSKLVWETL 377


>U80842-8|AAB37951.1|  244|Caenorhabditis elegans Hypothetical
           protein ZC239.12 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 25  ERESKRIIVAALKYFLRETLPPAATLSRVVLEFLDWCRDAERL--NAGVLSDRDRFIECS 82
           E+E + I+  A +++L+E L      S   +   D   D  +L   AG +SD++ F+ CS
Sbjct: 78  EKEVREILKEA-QFYLKEGLMELCKRSTCKMRTFDSYHDLLKLIAEAGKVSDKEIFVVCS 136

Query: 83  V 83
           +
Sbjct: 137 L 137


>U21487-1|AAA96949.1|  643|Caenorhabditis elegans ribonucleoprotein
           Ro autoantigenhomolog protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 2   DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKY--FLRETLPPAATLSRVVLEFL 58
           +  ++     R   L +   + K  +S+ +IVAA+K    +RE LP  +  S++V E L
Sbjct: 319 EEQLIKEEQSRALNLVEAYLKLKNEQSEEVIVAAIKKHGLVREHLPTTSLNSKLVWETL 377


>L41729-1|AAC41575.1|  643|Caenorhabditis elegans Ro
           ribonucleoprotein autoantigen protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 2   DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKY--FLRETLPPAATLSRVVLEFL 58
           +  ++     R   L +   + K  +S+ +IVAA+K    +RE LP  +  S++V E L
Sbjct: 319 EEQLIKEEQSRALNLVEAYLKLKNEQSEEVIVAAIKKHGLVREHLPTTSLNSKLVWETL 377


>AL021479-7|CAA16325.1|  643|Caenorhabditis elegans Hypothetical
           protein C12D8.11 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 2   DPDVLMTSMERITLLYKTLKQTKERESKRIIVAALKY--FLRETLPPAATLSRVVLEFL 58
           +  ++     R   L +   + K  +S+ +IVAA+K    +RE LP  +  S++V E L
Sbjct: 319 EEQLIKEEQSRALNLVEAYLKLKNEQSEEVIVAAIKKHGLVREHLPTTSLNSKLVWETL 377


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,307,029
Number of Sequences: 27539
Number of extensions: 135685
Number of successful extensions: 381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 6
length of query: 236
length of database: 12,573,161
effective HSP length: 79
effective length of query: 157
effective length of database: 10,397,580
effective search space: 1632420060
effective search space used: 1632420060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)