GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002251-TA|BGIBMGA002251-PA|IPR000091|Huntingtin
         (1855 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    29   0.39 
DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    27   1.2  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    25   4.8  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
            protein.
          Length = 249

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1184 VYAEYERKELEKDKARER-IGLKRDEEMTSSIDSNKLTVANTLHVFKKSDNKESKSQFFI 1242
            VY +++R ELEK+    R I ++R  E+ +S+  ++  V       +  + K+ K +  +
Sbjct: 162  VYTDHQRVELEKEFYYSRYITIRRKAELANSLGLSERQVKIWFQNRRAKERKQVKKREEV 221

Query: 1243 PIADNEKEFGNL 1254
               D+    G+L
Sbjct: 222  TQKDSPMNMGHL 233


>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory protein
            8 protein.
          Length = 99

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1347 RIMNAIDEADCDLLEKCIENILPLTIAKN 1375
            +++ A+D+A CD L   I+  LP  I KN
Sbjct: 35   QLLCALDKAPCDALGNQIKGALPEIIGKN 63


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 679 PKLKLRYLSIIMVLLRKVLVLIPESEILLSINYLKSTCVSPQSIF 723
           P++KL    + ++LL K+L + P S    ++NY K   V   + F
Sbjct: 2   PQVKLHKHYVPIILLSKILGIAPISYKNSNVNYSKIGIVQTVAYF 46


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,420
Number of Sequences: 317
Number of extensions: 16306
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 45
Number of HSP's gapped (non-prelim): 3
length of query: 1855
length of database: 114,650
effective HSP length: 67
effective length of query: 1788
effective length of database: 93,411
effective search space: 167018868
effective search space used: 167018868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)