Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002251-TA|BGIBMGA002251-PA|IPR000091|Huntingtin
(1855 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 35 0.12
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 33 0.29
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 33 0.38
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 32 0.66
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 31 2.0
SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 3.5
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 30 3.5
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 29 4.7
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 6.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 6.1
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 29 8.1
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 29 8.1
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 34.7 bits (76), Expect = 0.12
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 10/188 (5%)
Query: 658 SRVEVLLKILFKAPPDQSTTPPKLKLRYLSIIMVLLRKVLVLIPESEILLSINYLKSTCV 717
++++ L+I F+ PP S P +L+ ++ L + +L P + +
Sbjct: 372 NKIKEKLQICFEIPPTNSFDPWSFQLKQ-QVLNELKQNIL---PACGMDDGFQRFWQSLA 427
Query: 718 SPQSIFFNAKADVDPLNVLNVNENCANLSPD-VVLVRFLF---KTLTYAVTEVEKNYEPN 773
S + + + L L+++ ++ P+ + L +L KT + E+ ++ N
Sbjct: 428 SFDMVLDESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFAQIYELVCSFVNN 487
Query: 774 PKY--DTDENRLLYSVCVNIVVQVKQMLHLTTGCLFPLISKTAQSLLHNEQSGLNTGLYS 831
+ E +L S C+ IV +KQ H+ F + Q++L E + TG+Y
Sbjct: 488 VAVMESSSEKQLRTSRCLKIVRLLKQFRHMDESVPFDDLIYKLQNILVRELTDFTTGIYI 547
Query: 832 PDENIPLD 839
+ I LD
Sbjct: 548 NESKINLD 555
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 33.5 bits (73), Expect = 0.29
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 590 QQKVLELVSCILSLTQEHPESYYRYSELATDTLLNLLSQRSVELDSCLAVSALERLLETV 649
Q+K+ EL S I L + E+ +Y ELA + + +SVE D+ L++ AL+ +T+
Sbjct: 586 QEKINELNSQIDELKLKLNEANKKYQELAISFENSNVKTQSVEPDNGLSLEALKNENQTL 645
Query: 650 YKDVLLEQSRVEVLLK 665
K++ +R E L K
Sbjct: 646 LKNLEDSTARYEHLQK 661
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 33.1 bits (72), Expect = 0.38
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 356 NEGSRQTSFCEDVWTRADHGSRRSSVGSNASQKLCLDIKNP 396
+ GS +S+ + RA + SR SS GSNA + LD+ NP
Sbjct: 256 DSGSYSSSYSRHLDDRASYISRSSSGGSNAQRSEDLDVNNP 296
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 32.3 bits (70), Expect = 0.66
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 1 MVTELAKELTDEVSLDRATLSLQIVRDIYFYH----DLPRQLTEGNRTDGDTLKIVVGDL 56
++T L E + +AT + +I + F H P+ EG+ G LK + D
Sbjct: 173 IITNLKTESSKSSGAKKATSNAKITDTMLFNHFSSIQKPKLKAEGSTLKGQALKKTLEDT 232
Query: 57 MGRLMASSCKHYSQGLLEA 75
L K Y +GLL A
Sbjct: 233 WNNLTEEEKKPYHEGLLAA 251
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 703 SEILLSINYLKSTCVSPQSIFFNAKADVDPLNVLNVNENCANLSPD 748
+ IL + L+ C PQS+ F + DVD N L+ N L+ D
Sbjct: 537 TNILCLLLRLRQACNHPQSLNFQFEQDVDAFNALDGAANTNKLASD 582
>SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 1741 DGLQELSTVHQKLVKSLSSSHAPLRQAALQ 1770
D + STVHQK+ KSL +S+ LR A+Q
Sbjct: 17 DTCKNQSTVHQKVNKSLGNSNKVLRSNAVQ 46
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 29.9 bits (64), Expect = 3.5
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 634 DSCLAVSALERLLETVYKDVLLEQSRVEVLLKILFKAPPD---------QSTTPPKLKLR 684
D L V+ L+R+++T Y+ V EQ + + +L F+A PD + + P+ K
Sbjct: 8 DRELDVALLDRVVQTFYQGVGAEQQQAQQVL-TQFQAHPDAWSQAYSILEKSEYPQTKYI 66
Query: 685 YLSIIMVLLRKVLVLIPESEILLSINYL---------KSTCVSPQSIFFNAKADVDPLNV 735
LS++ L+ ++P+ + L NY+ T + Q F N K D+ + +
Sbjct: 67 ALSVLDKLITTRWKMLPKEQRLGIRNYIVAVMIKNSSDETVLQQQKTFLN-KLDLTLVQI 125
Query: 736 LNVN--ENCANLSPDVV 750
L N N P++V
Sbjct: 126 LKQEWPHNWPNFIPEIV 142
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 29.5 bits (63), Expect = 4.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 833 DENIPLDTLNMICLRAAHALPLLTAHW 859
DE++ LDTLN + R +H + HW
Sbjct: 85 DEDLILDTLNAVPARTSHKFGITDLHW 111
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 29.1 bits (62), Expect = 6.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 1211 TSSIDSNKLTVANTLHVFKKSDNKESKSQFFIPIADNEKEFGNLQLTDDEIELS 1264
TSS+ K+T +N + K D+K+ + +P + + DD+I+LS
Sbjct: 151 TSSLQQRKITPSNLSNTSKPMDSKQLERLIPVPHGHHLTRLRKKRRRDDDIDLS 204
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.1 bits (62), Expect = 6.1
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 11/131 (8%)
Query: 1144 LSNLSHEDVSTVMSCPEFERKILCSAFKVASDSYLREFLNVYAEYERKELEKDKARERIG 1203
+S L + S C + K+ A L E + A Y + KDK E +
Sbjct: 266 VSTLRQTENSLRAECKTLQEKLEKCAINEEDSKLLEELKHNVANYSDAIVHKDKLIEDLS 325
Query: 1204 LK-------RDEEMTSSIDSNKL--TVANTLHVFKKSDNKESK-SQFFIPIADNEKEFGN 1253
+ + E T SI + KL + NT+ K S S+ + + + ++ + +
Sbjct: 326 TRISEFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKESNRTI-H 384
Query: 1254 LQLTDDEIELS 1264
QLTD E +LS
Sbjct: 385 SQLTDAESKLS 395
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 28.7 bits (61), Expect = 8.1
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 1199 RERIGLKRDEEMTSSIDSNKLTVANTLHV--FKKSDNKESKSQFFIPIADNEKEFGNLQL 1256
R IGLK+DE +K V N L F +S+ Q + N K+ L+L
Sbjct: 99 RRTIGLKKDEYSLDKKTVSKTEVINLLESAGFSRSNPYYIVPQGRVTSLTNAKDSERLEL 158
Query: 1257 TDDEIELSLPE--LPVMYRVALSTFDRS--LIEVIRLFPKQNRPLSQSENFDLSVEHTVD 1312
+ + E ++ T +S + E+++ ++ R L + +N DL+V H D
Sbjct: 159 LKEVAGTQIYENRRAESNKIMDETIQKSEKIDELLQYIEERLRELEEEKN-DLAVYHKKD 217
Query: 1313 RYTRRC 1318
RRC
Sbjct: 218 N-ERRC 222
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 28.7 bits (61), Expect = 8.1
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 7 KELTDEVSLDRATLSLQIV--RDIYFYHD--LPRQLTEGNRTDGDTLKIVVGDLMGRLMA 62
KEL D S+D+ T S IV +YF + L R +++ NR D + +++V L+ +
Sbjct: 322 KELIDLFSIDKLTKSSSIVAFEKLYFLNKNYLRRAISDVNRLD-ELIELVQPRLIQKFSH 380
Query: 63 SSCKH---YSQGLLEALQ 77
SS H Y++ LL L+
Sbjct: 381 SSRSHDKSYTKKLLLLLK 398
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,944,644
Number of Sequences: 5004
Number of extensions: 328567
Number of successful extensions: 917
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 17
length of query: 1855
length of database: 2,362,478
effective HSP length: 83
effective length of query: 1772
effective length of database: 1,947,146
effective search space: 3450342712
effective search space used: 3450342712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -