Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002251-TA|BGIBMGA002251-PA|IPR000091|Huntingtin
(1855 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0230 - 14004159-14004344,14004422-14004514,14004613-140046... 36 0.41
01_06_1052 + 34129126-34130490 33 2.9
08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492 32 3.8
07_03_0107 - 13470054-13470126,13471723-13471851,13472000-134720... 32 5.0
01_05_0694 - 24347642-24348246,24349915-24349993,24350473-243506... 32 5.0
12_02_0332 + 17653413-17653581,17654045-17654139,17654292-176544... 31 6.7
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 31 6.7
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 31 8.8
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 31 8.8
>01_03_0230 - 14004159-14004344,14004422-14004514,14004613-14004673,
14004761-14004874,14004955-14005206,14005293-14007037
Length = 816
Score = 35.5 bits (78), Expect = 0.41
Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 1132 PKMSKHNHLAEILSNLSHEDVSTVMSCPEFERKILCSAFKVASDSYLREFLNVYAEYERK 1191
P+M K NH+ E+ S ++ + + + PE +I + +V + + + E
Sbjct: 355 PEMQKKNHVPEVPSEIAVPEAAMEIPVPEVPMEITVAEPEVQFVASVGSEIEEVPGLEWD 414
Query: 1192 ELEKDKARERIGLKRDEEMTSSIDSNKLTVANTLHVFKKSDNK---ESKSQFFIPIADNE 1248
E + + K E +++ T + VF+ D+K E+K +F + +
Sbjct: 415 GTEPEIFEDHSPAKDPEVQETTVPEKASTSSEVSRVFRSHDSKSKDENKEKFMVTVFRGG 474
Query: 1249 KEFGNLQLTD 1258
KE L+ D
Sbjct: 475 KEHAKLRDDD 484
>01_06_1052 + 34129126-34130490
Length = 454
Score = 32.7 bits (71), Expect = 2.9
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 175 KMLNVLVHLIEEVNPNVHLNKGGIALPGSPVRRKTQDSIQTRKNSTASESLDD--KASLK 232
++ ++++ + P+VH N+ G +PG P + + R STAS + D + S+
Sbjct: 75 QLFHLMMRRAIDAFPDVHFNRFGRPVPGDP--PSSSCDMAWRARSTASANYKDYRRFSVA 132
Query: 233 RKPLMPATSLRANFVGHFYNEPFYMKLYEG 262
R P+ A S+ + +G +++ P K G
Sbjct: 133 RDPVTCAYSVTS--IGEYHSGPLARKPRRG 160
>08_02_1250 - 25586442-25587023,25587141-25587827,25588389-25589492
Length = 790
Score = 32.3 bits (70), Expect = 3.8
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 392 DIKNPRMAAERQLLIALENFAKNKSDRKWSTNKEELEKYIKLFE 435
D+ + R+AAE + LE+FAK+ +D S +KE E +K E
Sbjct: 347 DVLDSRIAAEEEAASLLEHFAKDATDHTDSASKEAEEISLKEIE 390
>07_03_0107 -
13470054-13470126,13471723-13471851,13472000-13472086,
13472480-13472524,13473121-13473240,13474010-13474086,
13474319-13474407,13474620-13474693,13475177-13475243,
13476427-13476478,13477272-13477307
Length = 282
Score = 31.9 bits (69), Expect = 5.0
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 613 RYSELATDTLLNLLSQRSVELDSCLA-VSALERLLETVYKDVLLEQ--SRVEVLLKILFK 669
R S A D + L+++RS ++ L+ LL+ ++ + L + S ++VLLK+ F+
Sbjct: 108 RISISAKDIMFTLIARRSRHFAGTRKPINVLDVLLKVAFRALRLTEFYSVLDVLLKVAFR 167
Query: 670 APP 672
APP
Sbjct: 168 APP 170
>01_05_0694 - 24347642-24348246,24349915-24349993,24350473-24350607,
24351486-24351578,24351801-24351926,24352285-24352332,
24352552-24352653,24353234-24353317,24353754-24353825,
24354136-24354292,24354520-24354563,24354806-24354918,
24355252-24355368,24356330-24356399
Length = 614
Score = 31.9 bits (69), Expect = 5.0
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1038 RALKDVPPDNMNAQLSKEDVQVALELLQRDKVHVRYPALVMELNSLASSV-FDLSPL--- 1093
++LK++P D +NA L + Q+ L++ + + V ++ + + FD L
Sbjct: 306 KSLKNLPKDYVNALLVPKGGQIPLDIKNLSSKGIFHVVTVDSIHDGKTGIIFDPHSLIQA 365
Query: 1094 --DLSQDRAINPQHVLTTNVDSGWLLNQIK 1121
L DR +LT NV+SG + Q+K
Sbjct: 366 LTSLISDRRFVEPDLLTENVESGLTVEQVK 395
>12_02_0332 + 17653413-17653581,17654045-17654139,17654292-17654444,
17655013-17655117,17655197-17655268,17655514-17655626,
17655727-17655861,17655970-17656038,17656154-17656241,
17656348-17656419,17656505-17656605,17656724-17656841,
17656933-17656992,17657593-17657703,17659044-17659154
Length = 523
Score = 31.5 bits (68), Expect = 6.7
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 1159 PEFERKILCSAFKVASDSYLREFLNVYAEYERKELEKDKARERIGLKRDEEMTSSIDSNK 1218
P+ + K+L + FK L F N Y + R+ + D+ + +++ + + S S+
Sbjct: 173 PKLDSKLLSTYFKEHPHDNLPSFANKYIIF-RRGIGIDRTTDYFIMEKLDVIISRAWSSL 231
Query: 1219 LTVANTLHVFKK----SDNKESKSQFFIPIADNEKEFGNLQLTDDEIELSLPELPVMYRV 1274
L V +F K K++K I E E ++ ++IELS+ L +
Sbjct: 232 LRVTRIDRLFSKKPQVKSKKDTKKTDEINEDLEEPELFVERIRLEKIELSVRNLMSKMTI 291
Query: 1275 ALSTFDRSLI 1284
TFDR ++
Sbjct: 292 QEPTFDRMIV 301
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 31.5 bits (68), Expect = 6.7
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 370 TRADHGSRRSSVGSNASQKLCL-DIKNPRMAAERQLLIALENFAKNKSDRKWSTNKEELE 428
T+A ++ + K+ L ++++P ++ L+ LE+F KN S + T + +
Sbjct: 3076 TKAAKLEEKNETNTKEDDKMVLVEVESPVKNEDKTDLVELESFVKNVSLETFGTEENTMS 3135
Query: 429 KYIKLFE 435
+Y+K E
Sbjct: 3136 EYVKEME 3142
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 31.1 bits (67), Expect = 8.8
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 1683 SCVIHTSGAFSQPGQWCWAASQLIALTGPQHARLTQYSAAGRPLLTALSA 1732
SCV+ +GA W +AA Q IA + Q S A P+++ L A
Sbjct: 1549 SCVLFLNGAICMDIAWRFAAPQFIARAASSLRKAQQKSLASLPIVSLLLA 1598
>02_04_0414 - 22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 31.1 bits (67), Expect = 8.8
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 1130 VPPKMSKHNHLAEILSNLSHEDVSTVM--SCPEFERKILCSAFKVASDSYLREFLNVYAE 1187
+PP M K + E+LS E++ST + S P+ + I +S+LRE+LN+ A+
Sbjct: 46 LPPVMEKLRGIHEVLSE---EEISTFLGESYPDMNQTI-------EFESFLREYLNLQAK 95
Query: 1188 YERKELEKDKARERIG-LKRDEEMTSSI--DSNKLTVANTLHVFKKSDNKESKSQFFIPI 1244
K K K + + LK + +S K + N ++ F D S + F+P+
Sbjct: 96 GSSKTGGKKKLKGSVSFLKASTTTLLHVINESEKTSYVNHINNFLGED---SFLKNFLPL 152
Query: 1245 ADNEKEFGNL 1254
+ + NL
Sbjct: 153 DPSTNDIFNL 162
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,553,840
Number of Sequences: 37544
Number of extensions: 1903498
Number of successful extensions: 4391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4385
Number of HSP's gapped (non-prelim): 12
length of query: 1855
length of database: 14,793,348
effective HSP length: 93
effective length of query: 1762
effective length of database: 11,301,756
effective search space: 19913694072
effective search space used: 19913694072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 67 (31.1 bits)
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