Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002251-TA|BGIBMGA002251-PA|IPR000091|Huntingtin
(1855 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot... 288 1e-76
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein. 288 1e-76
AB209506-1|BAD92743.1| 1147|Homo sapiens huntingtin variant prot... 223 5e-57
Z49154-1|CAA89024.1| 570|Homo sapiens cL1C2.1 (exons 30-41) pro... 173 7e-42
Z49769-1|CAA89839.1| 959|Homo sapiens cL27F12.1 (exons 42-61) p... 77 8e-13
>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
protein.
Length = 3144
Score = 288 bits (706), Expect = 1e-76
Identities = 276/1060 (26%), Positives = 466/1060 (43%), Gaps = 87/1060 (8%)
Query: 154 WQHLDGDRVASLAEKFLQVTLKMLNVLVHLIEEVNPNVHLNKGGIALPG----SPVRRKT 209
W L + + E+ LK++N+ H++++V P + +L SP+RRK
Sbjct: 1128 WPALGDRALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKG 1187
Query: 210 QDSIQTRKNSTASE----SLDDKASLKRKPLMPATSLRANFVGHFYNEPFYMKLYEGLRA 265
++ + S S AS + P T+ +++ +G FY+ P Y+KL++ L+A
Sbjct: 1188 KEKEPGEQASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKA 1247
Query: 266 AYSNHKINLDPKSSI--FHTFLSTTLDCLAVQLELSTEKEFGSVTEEILYYLKAIMPLCA 323
++N+K+ LD ++S F FL + LD L+ LEL+T ++ G EEIL YLK+
Sbjct: 1248 THANYKVTLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREP 1307
Query: 324 DNTVYCVTQLLKCLFGTNMVAQYDDYMSISDKNEGSRQTSFCEDVWTRADHGSRRSSVGS 383
CV QLLK LFGTN+ +Q+D S K++G Q V H +
Sbjct: 1308 MMATVCVQQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTH 1367
Query: 384 NASQKLCLDIKNPRMAAERQ-------LLIALENFAKNK--SDRKWSTNKEELEKYIKLF 434
++N A + +L + K S K +K + +I+LF
Sbjct: 1368 FTQALADASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLF 1427
Query: 435 EPVVIQSLKSYTMQNDIPXXXXXXXXXXXXXXXXXXYCMLDNDLIFIGFLMKQLDLFEQH 494
EP+VI++LK YT + YC+LD+D +FIGF++KQ + E
Sbjct: 1428 EPLVIKALKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG 1487
Query: 495 EIPNCCDLVNSILMFLVQLSSSKHHTKKIIEIPKLIQLCDGLMASGAHA--ECIAGLEPV 552
+ ++ +I FLV LS ++H+K+II IPK+IQLCDG+MASG A I L+P+
Sbjct: 1488 QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI 1547
Query: 553 AVKVFSSMGGNVLGRXXXXXXXXTREVLFYMLQKTMHQQKVLELVSCIL-SLTQEHPESY 611
+F G N +EV+ ML + + +VLE+ +L +E+ + +
Sbjct: 1548 VHDLFVLRGTN--KADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKW 1605
Query: 612 YRYSELATDTLLNLLSQRSVELDSCLAVSALERLLETVYKDVLLEQSRVEVLLKILFKAP 671
R S D +L +L+++ + +DS A+ L L E + L V++LL+ +F
Sbjct: 1606 KRLSRQIADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSL---RPVDMLLRSMF-VT 1661
Query: 672 PDQSTTPPKLKLRYLSIIMVLLRKVLVLIPESEILLSINYLKSTCVSPQSIFFNAKADVD 731
P+ + ++L ++S I+ +LR ++ E +L I L + N D D
Sbjct: 1662 PNTMASVSTVQL-WISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGD 1720
Query: 732 PLNVLNVNENCANLS--PDVVLVRFLFKTLTYAVTEVEKNYEPNPKYDTDENRLLYSVCV 789
+ L + + P+ RFL + + + ++ K + E + + C
Sbjct: 1721 STSTLEEHSEGKQIKNLPEETFSRFLLQLVGILLEDI---VTKQLKVEMSEQQHTF-YCQ 1776
Query: 790 NIVVQVKQMLHLTTGCLFPLISKTAQSLLHNEQSGLNTGLYSPDENIPLDTLNMICLRAA 849
+ + ++H+ +F I+ A L ++ G Y+ LD+LN+
Sbjct: 1777 ELGTLLMCLIHIFKSGMFRRITAAATRLFRSD--GCGGSFYT------LDSLNLRARSMI 1828
Query: 850 HALPLLTAHWSHLLIRLNFLTHKYW--------------QKLVGFVRSXXXXXXXXXXXX 895
P L W +L+ +N +++W KL+ S
Sbjct: 1829 TTHPALVLLWCQILLLVNHTDYRWWAEVQQTPKRHSLSSTKLLSPQMSGEEEDSDLAAKL 1888
Query: 896 XRV--DVLQIACVMAYCEYFVENGLTEAVHLTWLLVNRVHILVSQFSQTLVQGLISRVQQ 953
++++ ++ +C+Y +N L ++ HLTWL+VN + L+S + VQ IS V +
Sbjct: 1889 GMCNREIVRRGALILFCDYVCQN-LHDSEHLTWLIVNHIQDLISLSHEPPVQDFISAVHR 1947
Query: 954 TSGASGLLLQAIAARCQGCLKRYLNIHVHKDSFPQDEFALNVYKILSFCHESQSGALVFL 1013
S ASGL +QAI +RC+ S P + L H SQSGA++ L
Sbjct: 1948 NSAASGLFIQAIQSRCENL------------STP--TMLKKTLQCLEGIHLSQSGAVLTL 1993
Query: 1014 -ICRIIGKLEPAIAVKFAKLAIERCRALKDVPPDNMNAQLSKEDVQVALELLQRDKVHVR 1072
+ R++ +A LA R L + AQL E++ E LQ + R
Sbjct: 1994 YVDRLLCTPFRVLARMVDILACRRVEMLLAANLQSSMAQLPMEELNRIQEYLQSSGLAQR 2053
Query: 1073 YPALVMELNSLASSVF--DLSPL-DLSQDRAINPQHVL--TTNVDSGWLLNQIKNRC-CR 1126
+ L L+ S LSP +S HV T + D W ++ +K++C R
Sbjct: 2054 HQRLYSLLDRFRLSTMQDSLSPSPPVSSHPLDGDGHVSLETVSPDKDWYVHLVKSQCWTR 2113
Query: 1127 SDCVPPKMSKHNHLAEILSNLSHEDVSTVMSCPEFERKIL 1166
SD S AE+++ + ED++ M EF +L
Sbjct: 2114 SD------SALLEGAELVNRIPAEDMNAFMMNSEFNLSLL 2147
Score = 70.1 bits (164), Expect = 7e-11
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1469 DTKPLVLKHYMRTDDSGPKPDILITGDKLVT-LVEYWEDNFYAGH--GYVMPKCYKKPLE 1525
+T + + D + P + ++V +VE + GH +P L
Sbjct: 2336 NTPKAISEEEEEVDPNTQNPKYITAACEMVAEMVESLQSVLALGHKRNSGVPAFLTPLLR 2395
Query: 1526 SMLVSLARLDVVSNVALIPPIAWSTVEVAMKKDQLQKI--ELPLQALQDQDVLKAFLFRV 1583
++++SLARL +V++ +PP+ W E+P++ LQ+++V K F++R+
Sbjct: 2396 NIIISLARLPLVNSYTRVPPLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRI 2455
Query: 1584 NLIGWSNKKQFEEIWVGLLGAL 1605
N +GW+++ QFEE W LLG L
Sbjct: 2456 NTLGWTSRTQFEETWATLLGVL 2477
>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
Length = 3144
Score = 288 bits (706), Expect = 1e-76
Identities = 276/1060 (26%), Positives = 466/1060 (43%), Gaps = 87/1060 (8%)
Query: 154 WQHLDGDRVASLAEKFLQVTLKMLNVLVHLIEEVNPNVHLNKGGIALPG----SPVRRKT 209
W L + + E+ LK++N+ H++++V P + +L SP+RRK
Sbjct: 1128 WPALGDRALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKG 1187
Query: 210 QDSIQTRKNSTASE----SLDDKASLKRKPLMPATSLRANFVGHFYNEPFYMKLYEGLRA 265
++ + S S AS + P T+ +++ +G FY+ P Y+KL++ L+A
Sbjct: 1188 KEKEPGEQASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKA 1247
Query: 266 AYSNHKINLDPKSSI--FHTFLSTTLDCLAVQLELSTEKEFGSVTEEILYYLKAIMPLCA 323
++N+K+ LD ++S F FL + LD L+ LEL+T ++ G EEIL YLK+
Sbjct: 1248 THANYKVTLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREP 1307
Query: 324 DNTVYCVTQLLKCLFGTNMVAQYDDYMSISDKNEGSRQTSFCEDVWTRADHGSRRSSVGS 383
CV QLLK LFGTN+ +Q+D S K++G Q V H +
Sbjct: 1308 MMATVCVQQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTH 1367
Query: 384 NASQKLCLDIKNPRMAAERQ-------LLIALENFAKNK--SDRKWSTNKEELEKYIKLF 434
++N A + +L + K S K +K + +I+LF
Sbjct: 1368 FTQALADASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLF 1427
Query: 435 EPVVIQSLKSYTMQNDIPXXXXXXXXXXXXXXXXXXYCMLDNDLIFIGFLMKQLDLFEQH 494
EP+VI++LK YT + YC+LD+D +FIGF++KQ + E
Sbjct: 1428 EPLVIKALKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG 1487
Query: 495 EIPNCCDLVNSILMFLVQLSSSKHHTKKIIEIPKLIQLCDGLMASGAHA--ECIAGLEPV 552
+ ++ +I FLV LS ++H+K+II IPK+IQLCDG+MASG A I L+P+
Sbjct: 1488 QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI 1547
Query: 553 AVKVFSSMGGNVLGRXXXXXXXXTREVLFYMLQKTMHQQKVLELVSCIL-SLTQEHPESY 611
+F G N +EV+ ML + + +VLE+ +L +E+ + +
Sbjct: 1548 VHDLFVLRGTN--KADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKW 1605
Query: 612 YRYSELATDTLLNLLSQRSVELDSCLAVSALERLLETVYKDVLLEQSRVEVLLKILFKAP 671
R S D +L +L+++ + +DS A+ L L E + L V++LL+ +F
Sbjct: 1606 KRLSRQIADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSL---RPVDMLLRSMF-VT 1661
Query: 672 PDQSTTPPKLKLRYLSIIMVLLRKVLVLIPESEILLSINYLKSTCVSPQSIFFNAKADVD 731
P+ + ++L ++S I+ +LR ++ E +L I L + N D D
Sbjct: 1662 PNTMASVSTVQL-WISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGD 1720
Query: 732 PLNVLNVNENCANLS--PDVVLVRFLFKTLTYAVTEVEKNYEPNPKYDTDENRLLYSVCV 789
+ L + + P+ RFL + + + ++ K + E + + C
Sbjct: 1721 STSTLEEHSEGKQIKNLPEETFSRFLLQLVGILLEDI---VTKQLKVEMSEQQHTF-YCQ 1776
Query: 790 NIVVQVKQMLHLTTGCLFPLISKTAQSLLHNEQSGLNTGLYSPDENIPLDTLNMICLRAA 849
+ + ++H+ +F I+ A L ++ G Y+ LD+LN+
Sbjct: 1777 ELGTLLMCLIHIFKSGMFRRITAAATRLFRSD--GCGGSFYT------LDSLNLRARSMI 1828
Query: 850 HALPLLTAHWSHLLIRLNFLTHKYW--------------QKLVGFVRSXXXXXXXXXXXX 895
P L W +L+ +N +++W KL+ S
Sbjct: 1829 TTHPALVLLWCQILLLVNHTDYRWWAEVQQTPKRHSLSSTKLLSPQMSGEEEDSDLAAKL 1888
Query: 896 XRV--DVLQIACVMAYCEYFVENGLTEAVHLTWLLVNRVHILVSQFSQTLVQGLISRVQQ 953
++++ ++ +C+Y +N L ++ HLTWL+VN + L+S + VQ IS V +
Sbjct: 1889 GMCNREIVRRGALILFCDYVCQN-LHDSEHLTWLIVNHIQDLISLSHEPPVQDFISAVHR 1947
Query: 954 TSGASGLLLQAIAARCQGCLKRYLNIHVHKDSFPQDEFALNVYKILSFCHESQSGALVFL 1013
S ASGL +QAI +RC+ S P + L H SQSGA++ L
Sbjct: 1948 NSAASGLFIQAIQSRCENL------------STP--TMLKKTLQCLEGIHLSQSGAVLTL 1993
Query: 1014 -ICRIIGKLEPAIAVKFAKLAIERCRALKDVPPDNMNAQLSKEDVQVALELLQRDKVHVR 1072
+ R++ +A LA R L + AQL E++ E LQ + R
Sbjct: 1994 YVDRLLCTPFRVLARMVDILACRRVEMLLAANLQSSMAQLPMEELNRIQEYLQSSGLAQR 2053
Query: 1073 YPALVMELNSLASSVF--DLSPL-DLSQDRAINPQHVL--TTNVDSGWLLNQIKNRC-CR 1126
+ L L+ S LSP +S HV T + D W ++ +K++C R
Sbjct: 2054 HQRLYSLLDRFRLSTMQDSLSPSPPVSSHPLDGDGHVSLETVSPDKDWYVHLVKSQCWTR 2113
Query: 1127 SDCVPPKMSKHNHLAEILSNLSHEDVSTVMSCPEFERKIL 1166
SD S AE+++ + ED++ M EF +L
Sbjct: 2114 SD------SALLEGAELVNRIPAEDMNAFMMNSEFNLSLL 2147
Score = 70.1 bits (164), Expect = 7e-11
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1469 DTKPLVLKHYMRTDDSGPKPDILITGDKLVT-LVEYWEDNFYAGH--GYVMPKCYKKPLE 1525
+T + + D + P + ++V +VE + GH +P L
Sbjct: 2336 NTPKAISEEEEEVDPNTQNPKYITAACEMVAEMVESLQSVLALGHKRNSGVPAFLTPLLR 2395
Query: 1526 SMLVSLARLDVVSNVALIPPIAWSTVEVAMKKDQLQKI--ELPLQALQDQDVLKAFLFRV 1583
++++SLARL +V++ +PP+ W E+P++ LQ+++V K F++R+
Sbjct: 2396 NIIISLARLPLVNSYTRVPPLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRI 2455
Query: 1584 NLIGWSNKKQFEEIWVGLLGAL 1605
N +GW+++ QFEE W LLG L
Sbjct: 2456 NTLGWTSRTQFEETWATLLGVL 2477
>AB209506-1|BAD92743.1| 1147|Homo sapiens huntingtin variant protein.
Length = 1147
Score = 223 bits (545), Expect = 5e-57
Identities = 174/627 (27%), Positives = 292/627 (46%), Gaps = 31/627 (4%)
Query: 154 WQHLDGDRVASLAEKFLQVTLKMLNVLVHLIEEVNPNVHLNKGGIALPG----SPVRRKT 209
W L + + E+ LK++N+ H++++V P + +L SP+RRK
Sbjct: 524 WPALGDRALVPMVEQLFSHLLKVINICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKG 583
Query: 210 QDSIQTRKNSTASE----SLDDKASLKRKPLMPATSLRANFVGHFYNEPFYMKLYEGLRA 265
++ + S S AS + P T+ +++ +G FY+ P Y+KL++ L+A
Sbjct: 584 KEKEPGEQASVPLSPKKGSEASAASRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKA 643
Query: 266 AYSNHKINLDPKSSI--FHTFLSTTLDCLAVQLELSTEKEFGSVTEEILYYLKAIMPLCA 323
++N+K+ LD ++S F FL + LD L+ LEL+T ++ G EEIL YLK+
Sbjct: 644 THANYKVTLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREP 703
Query: 324 DNTVYCVTQLLKCLFGTNMVAQYDDYMSISDKNEGSRQTSFCEDVWTRADHGSRRSSVGS 383
CV QLLK LFGTN+ +Q+D S K++G Q V H +
Sbjct: 704 MMATVCVQQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTH 763
Query: 384 NASQKLCLDIKNPRMAAERQ-------LLIALENFAKNK--SDRKWSTNKEELEKYIKLF 434
++N A + +L + K S K +K + +I+LF
Sbjct: 764 FTQALADASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLF 823
Query: 435 EPVVIQSLKSYTMQNDIPXXXXXXXXXXXXXXXXXXYCMLDNDLIFIGFLMKQLDLFEQH 494
EP+VI++LK YT + YC+LD+D +FIGF++KQ + E
Sbjct: 824 EPLVIKALKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVG 883
Query: 495 EIPNCCDLVNSILMFLVQLSSSKHHTKKIIEIPKLIQLCDGLMASGAHA--ECIAGLEPV 552
+ ++ +I FLV LS ++H+K+II IPK+IQLCDG+MASG A I L+P+
Sbjct: 884 QFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPI 943
Query: 553 AVKVFSSMGGNVLGRXXXXXXXXTREVLFYMLQKTMHQQKVLELVSCIL-SLTQEHPESY 611
+F G N +EV+ ML + + +VLE+ +L +E+ + +
Sbjct: 944 VHDLFVLRGTN--KADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKW 1001
Query: 612 YRYSELATDTLLNLLSQRSVELDSCLAVSALERLLETVYKDVLLEQSRVEVLLKILFKAP 671
R S D +L +L+++ + +DS A+ L L E + L V++LL+ +F
Sbjct: 1002 KRLSRQIADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSL---RPVDMLLRSMF-VT 1057
Query: 672 PDQSTTPPKLKLRYLSIIMVLLRKVLVLIPESEILLSINYLKSTCVSPQSIFFNAKADVD 731
P+ + ++L ++S I+ +LR ++ E +L I L + N D D
Sbjct: 1058 PNTMASVSTVQL-WISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGD 1116
Query: 732 PLNVLNVNENCANLS--PDVVLVRFLF 756
+ L + + P+ R+ F
Sbjct: 1117 STSTLEEHSEGKQIKNLPEETFSRYAF 1143
>Z49154-1|CAA89024.1| 570|Homo sapiens cL1C2.1 (exons 30-41)
protein.
Length = 570
Score = 173 bits (420), Expect = 7e-42
Identities = 149/583 (25%), Positives = 256/583 (43%), Gaps = 33/583 (5%)
Query: 309 EEILYYLKAIMPLCADNTVYCVTQLLKCLFGTNMVAQYDDYMSISDKNEGSRQTSFCEDV 368
EEIL YLK+ CV QLLK LFGTN+ +Q+D S K++G Q V
Sbjct: 3 EEILGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDGLSSNPSKSQGRAQRLGSSSV 62
Query: 369 WTRADHGSRRSSVGSNASQKLCLDIKNPRMAAERQ-------LLIALENFAKNK--SDRK 419
H + ++N A + +L + K S K
Sbjct: 63 RPGLYHYCFMAPYTHFTQALADASLRNMVQAEQENDTSGWFDVLQKVSTQLKTNLTSVTK 122
Query: 420 WSTNKEELEKYIKLFEPVVIQSLKSYTMQNDIPXXXXXXXXXXXXXXXXXXYCMLDNDLI 479
+K + +I+LFEP+VI++LK YT + YC+LD+D +
Sbjct: 123 NRADKNAIHNHIRLFEPLVIKALKQYTTTTCVQLQKQVLDLLAQLVQLRVNYCLLDSDQV 182
Query: 480 FIGFLMKQLDLFEQHEIPNCCDLVNSILMFLVQLSSSKHHTKKIIEIPKLIQLCDGLMAS 539
FIGF++KQ + E + ++ +I FLV LS ++H+K+II IPK+IQLCDG+MAS
Sbjct: 183 FIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMAS 242
Query: 540 GAHA--ECIAGLEPVAVKVFSSMGGNVLGRXXXXXXXXTREVLFYMLQKTMHQQKVLELV 597
G A I L+P+ +F G N +EV+ ML + + +VLE+
Sbjct: 243 GRKAVTHAIPALQPIVHDLFVLRGTN--KADAGKELETQKEVVVSMLLRLIQYHQVLEMF 300
Query: 598 SCIL-SLTQEHPESYYRYSELATDTLLNLLSQRSVELDSCLAVSALERLLETVYKDVLLE 656
+L +E+ + + R S D +L +L+++ + +DS A+ L L E + L
Sbjct: 301 ILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSL-- 358
Query: 657 QSRVEVLLKILFKAPPDQSTTPPKLKLRYLSIIMVLLRKVLVLIPESEILLSINYLKSTC 716
V++LL+ +F P+ + ++L ++S I+ +LR ++ E +L I L +
Sbjct: 359 -RPVDMLLRSMF-VTPNTMASVSTVQL-WISGILAILRVLISQSTEDIVLSRIQELSFSP 415
Query: 717 VSPQSIFFNAKADVDPLNVLNVNENCANLS--PDVVLVRFLFKTLTYAVTEVEKNYEPNP 774
N D D + L + + P+ RFL + + + ++
Sbjct: 416 YLISCTVINRLRDGDSTSTLEEHSEGKQIKNLPEETFSRFLLQLVGILLEDI---VTKQL 472
Query: 775 KYDTDENRLLYSVCVNIVVQVKQMLHLTTGCLFPLISKTAQSLLHNEQSGLNTGLYSPDE 834
K + E + + C + + ++H+ +F I+ A L ++ G Y+
Sbjct: 473 KVEMSEQQHTF-YCQELGTLLMCLIHIFKSGMFRRITAAATRLFRSD--GCGGSFYT--- 526
Query: 835 NIPLDTLNMICLRAAHALPLLTAHWSHLLIRLNFLTHKYWQKL 877
LD+LN+ P L W +L+ +N +++W ++
Sbjct: 527 ---LDSLNLRARSMITTHPALVLLWCQILLLVNHTDYRWWAEV 566
>Z49769-1|CAA89839.1| 959|Homo sapiens cL27F12.1 (exons 42-61)
protein.
Length = 959
Score = 76.6 bits (180), Expect = 8e-13
Identities = 78/275 (28%), Positives = 124/275 (45%), Gaps = 28/275 (10%)
Query: 899 DVLQIACVMAYCEYFVENGLTEAVHLTWLLVNRVHILVSQFSQTLVQGLISRVQQTSGAS 958
++++ ++ +C+Y +N L ++ HLTWL+VN + L+S + VQ IS V + S AS
Sbjct: 33 EIVRRGALILFCDYVCQN-LHDSEHLTWLIVNHIQDLISLSHEPPVQDFISAVHRNSAAS 91
Query: 959 GLLLQAIAARCQGCLKRYLNIHVHKDSFPQDEFALNVYKILSFCHESQSGALVFL-ICRI 1017
GL +QAI +RC+ S P + L H SQSGA++ L + R+
Sbjct: 92 GLFIQAIQSRCENL------------STP--TMLKKTLQCLEGIHLSQSGAVLTLYVDRL 137
Query: 1018 IGKLEPAIAVKFAKLAIERCRALKDVPPDNMNAQLSKEDVQVALELLQRDKVHVRYPALV 1077
+ +A LA R L + AQL E++ E LQ + R+ L
Sbjct: 138 LCTPFRVLARMVDILACRRVEMLLAANLQSSMAQLPMEELNRIQEYLQSSGLAQRHQRLY 197
Query: 1078 MELNSLASSVF--DLSPL-DLSQDRAINPQHVL--TTNVDSGWLLNQIKNRC-CRSDCVP 1131
L+ S LSP +S HV T + D W ++ +K++C RSD
Sbjct: 198 SLLDRFRLSTMQDSLSPSPPVSSHPLDGDGHVSLETVSPDKDWYVHLVKSQCWTRSD--- 254
Query: 1132 PKMSKHNHLAEILSNLSHEDVSTVMSCPEFERKIL 1166
S AE+++ + ED++ M EF +L
Sbjct: 255 ---SALLEGAELVNRIPAEDMNAFMMNSEFNLSLL 286
Score = 70.1 bits (164), Expect = 7e-11
Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1469 DTKPLVLKHYMRTDDSGPKPDILITGDKLVT-LVEYWEDNFYAGH--GYVMPKCYKKPLE 1525
+T + + D + P + ++V +VE + GH +P L
Sbjct: 475 NTPKAISEEEEEVDPNTQNPKYITAACEMVAEMVESLQSVLALGHKRNSGVPAFLTPLLR 534
Query: 1526 SMLVSLARLDVVSNVALIPPIAWSTVEVAMKKDQLQKI--ELPLQALQDQDVLKAFLFRV 1583
++++SLARL +V++ +PP+ W E+P++ LQ+++V K F++R+
Sbjct: 535 NIIISLARLPLVNSYTRVPPLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRI 594
Query: 1584 NLIGWSNKKQFEEIWVGLLGAL 1605
N +GW+++ QFEE W LLG L
Sbjct: 595 NTLGWTSRTQFEETWATLLGVL 616
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.321 0.135 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,695,716
Number of Sequences: 224733
Number of extensions: 9724460
Number of successful extensions: 21143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21110
Number of HSP's gapped (non-prelim): 17
length of query: 1855
length of database: 73,234,838
effective HSP length: 101
effective length of query: 1754
effective length of database: 50,536,805
effective search space: 88641555970
effective search space used: 88641555970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 72 (33.1 bits)
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