GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002251-TA|BGIBMGA002251-PA|IPR000091|Huntingtin
         (1855 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical ...    35   0.63 
Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical pr...    33   2.6  
U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr...    33   2.6  
U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical pr...    33   2.6  
Z19157-3|CAA79568.1|  826|Caenorhabditis elegans Hypothetical pr...    31   7.8  

>AL132876-8|CAD21660.1|  829|Caenorhabditis elegans Hypothetical
           protein Y105E8A.9 protein.
          Length = 829

 Score = 34.7 bits (76), Expect = 0.63
 Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 22/208 (10%)

Query: 518 HHTKKIIEIPKLIQLCDGLMASGAHAEC-IAGLEPVAVKVFSSMGGNVLGRXXXXXXXXT 576
           +H KK++  P L+++   L+ SG   E  + G+    ++V       VLG+         
Sbjct: 232 NHFKKLV--PNLVRILKNLLMSGYSPEHDVTGISDPFLQVKILRLLRVLGKDDVRVTEEM 289

Query: 577 REVLFYMLQKTMHQQKVLE--LVSCILSLTQEHPESYYRYSELATDTLLNLLSQRSVELD 634
            ++L  +   T   + V    L   +L++ +   ES  R   LA    +N+L +  +  D
Sbjct: 290 NDILAQVATNTETAKNVGNAILYETVLTIMEIKSESGLRI--LA----VNILGRFLLNTD 343

Query: 635 SCLAVSALERLLETVYKDVLLEQSRVEVLLKILFKAPPDQSTTPPKLKLRYLSIIMVLLR 694
             +   AL  LL+TV+ D    Q    V+++ L    PD S     ++ R + +   L+ 
Sbjct: 344 KNIRYVALNTLLKTVHVDYQAVQRHRNVVVECL--KDPDIS-----IRKRAMELCFALMN 396

Query: 695 KVLVLIPESEILLSIN----YLKSTCVS 718
           +  + I   E+L+ +       KS C S
Sbjct: 397 RTNIAIMTKEVLIFLETADAEFKSECAS 424


>Z79601-1|CAB01885.2|  716|Caenorhabditis elegans Hypothetical protein
            K09A9.4 protein.
          Length = 716

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 1074 PALVMELNSLASSVFDLSPLDLSQ-----DRAINPQHVLTTNVDSGWLLNQIKNRCCR-S 1127
            P L  ++ S    V D++P DLSQ      + +     ++ +      +N +K+ CC+ S
Sbjct: 58   PMLPKQMESRCKHVKDINPSDLSQLLQKKLKCMTCHDSVSFSCAHQDCINSLKSSCCKNS 117

Query: 1128 DCVPPKMSKHNH 1139
            D + P M+ HNH
Sbjct: 118  DHLLPHMAVHNH 129


>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical
           protein T05C1.4b protein.
          Length = 1163

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 162 VASLAEKFLQVTLKMLNVLVHLIEEVNPNVHLNKGGIALPGSPVRRKTQDSIQ---TRKN 218
           ++ L ++   + L+ LNV   L+ E+N   HL K G+ LP SP+ ++   S      R+N
Sbjct: 220 LSQLHDQLSPIFLQTLNVN-QLVAEINE--HLKKKGVNLPTSPLPQEPSSSTSRELERRN 276

Query: 219 STASESLDDKAS--LKRKPLMPATSLRANFVG 248
           S +S      +S  L+R+P    + + AN +G
Sbjct: 277 SCSSAFRKGLSSVALRRQP-SANSEIDANHIG 307


>U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical
           protein T05C1.4a protein.
          Length = 1185

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 9/92 (9%)

Query: 162 VASLAEKFLQVTLKMLNVLVHLIEEVNPNVHLNKGGIALPGSPVRRKTQDSIQ---TRKN 218
           ++ L ++   + L+ LNV   L+ E+N   HL K G+ LP SP+ ++   S      R+N
Sbjct: 220 LSQLHDQLSPIFLQTLNVN-QLVAEINE--HLKKKGVNLPTSPLPQEPSSSTSRELERRN 276

Query: 219 STASESLDDKAS--LKRKPLMPATSLRANFVG 248
           S +S      +S  L+R+P    + + AN +G
Sbjct: 277 SCSSAFRKGLSSVALRRQP-SANSEIDANHIG 307


>Z19157-3|CAA79568.1|  826|Caenorhabditis elegans Hypothetical protein
            ZC84.3 protein.
          Length = 826

 Score = 31.1 bits (67), Expect = 7.8
 Identities = 13/56 (23%), Positives = 31/56 (55%)

Query: 1408 RATDAATRHVTVDSLVAVTVENVSKALAVREIWMELNADSNANRTQSAISCLYAVV 1463
            ++T      V ++S V +  + + K   V+++  ++ +  NA+  +SAIS +Y ++
Sbjct: 569  QSTSRLMEKVNLNSTVTLPPDTLEKIQNVQDLLQKMRSSENADEQESAISSIYMMI 624


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,473,825
Number of Sequences: 27539
Number of extensions: 1738377
Number of successful extensions: 4426
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4423
Number of HSP's gapped (non-prelim): 6
length of query: 1855
length of database: 12,573,161
effective HSP length: 92
effective length of query: 1763
effective length of database: 10,039,573
effective search space: 17699767199
effective search space used: 17699767199
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 67 (31.1 bits)