GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002251-TA|BGIBMGA002251-PA|IPR000091|Huntingtin
         (1855 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    29   0.35 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   3.3  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 19/78 (24%), Positives = 40/78 (51%)

Query: 695 KVLVLIPESEILLSINYLKSTCVSPQSIFFNAKADVDPLNVLNVNENCANLSPDVVLVRF 754
           +++++  +++ +L I  LKS+  +  S F +   DVDP N  N     ++LS   ++V  
Sbjct: 144 RIIIIDLKTDKILRIYPLKSSDQTSDSFFVDLVIDVDPNNCDNTYAYISDLSGYALVVYS 203

Query: 755 LFKTLTYAVTEVEKNYEP 772
             K  ++ +T     ++P
Sbjct: 204 WAKNDSWRITHNFFYFDP 221


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 1521 KKPLESMLVSLARLDVVSNVALIPPIAWSTVEVAMKKDQLQK 1562
            K P    L ++A + +V  V +I  I    +EVA KK Q++K
Sbjct: 813  KAPNTLGLKNMAGVFIVVGVGIIGGIGLIIIEVAYKKHQIRK 854


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.135    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 485,258
Number of Sequences: 429
Number of extensions: 19951
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 3
length of query: 1855
length of database: 140,377
effective HSP length: 68
effective length of query: 1787
effective length of database: 111,205
effective search space: 198723335
effective search space used: 198723335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)