GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002250-TA|BGIBMGA002250-PA|IPR000091|Huntingtin
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    31   0.49 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    31   0.86 
SPAC664.08c |||traub transciption factor family protein |Schizos...    31   0.86 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    30   1.1  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    29   2.6  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    29   2.6  
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac...    29   2.6  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    29   3.5  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    28   4.6  

>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 505 ADAKIHNISGSSEGTDSNQDNINEYILERNVCYQDSLTDSLSQELNRSIEGH--SICKKD 562
           +D++  + S  S+ + S+ D+ +E   E +    DS + S S E   S E +  S    D
Sbjct: 187 SDSESESSSEDSDSSSSSSDSESESSSEGS----DSSSSSSSSESESSSEDNDSSSSSSD 242

Query: 563 IKSLEKSTDSGEKSSKDAPSIDSKHKTDLMGSAMTDSTNPXXXXXXXXXXXXXXXXXDQT 622
            +S   S DS   SS      +S  K     S  +DS +                  D T
Sbjct: 243 SESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDST 302

Query: 623 S 623
           S
Sbjct: 303 S 303



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 513 SGSSEGTDSNQDNINEYILERNVCYQDSLTDSLSQELNRSIEGHSICKKDIKSLEKSTDS 572
           S SSE   S++DN +      +   + S  DS S   +   E  S   KD  S   S+DS
Sbjct: 222 SSSSESESSSEDNDSSSSSSDSES-ESSSEDSDSSSSSSDSESES-SSKDSDSSSNSSDS 279

Query: 573 GEKSSKDAPSIDSKHKTDLMGSAMTDS 599
            + SS D+   +S+  ++   S  + S
Sbjct: 280 EDDSSSDSSDSESESSSEDSDSTSSSS 306



 Score = 28.3 bits (60), Expect = 4.6
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 7/128 (5%)

Query: 502 DKDADAKIHNISGSSEGTDSNQDNI---NEYILERN---VCYQDSLTDSLSQELNRSIEG 555
           D  + +       SSEG+DS+  +    +E   E N       DS ++S S++ + S   
Sbjct: 199 DSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSS-SS 257

Query: 556 HSICKKDIKSLEKSTDSGEKSSKDAPSIDSKHKTDLMGSAMTDSTNPXXXXXXXXXXXXX 615
            S  + +  S +  + S    S+D  S DS        S  +DST+              
Sbjct: 258 SSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDG 317

Query: 616 XXXXDQTS 623
               D T+
Sbjct: 318 NSNTDTTT 325



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 1/198 (0%)

Query: 504 DADAKIHNISGSSEGTDSNQDNINEYILERNVCYQDSLTDSLSQELNRSIEGHSICKKDI 563
           ++D+       SSE  DS+  + ++   E +    DS + S   E   S EG        
Sbjct: 111 ESDSSSSESESSSEDNDSSSSS-SDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSS 169

Query: 564 KSLEKSTDSGEKSSKDAPSIDSKHKTDLMGSAMTDSTNPXXXXXXXXXXXXXXXXXDQTS 623
            S  +S+     SS  +   +S+  ++   S+ + S +                  +  S
Sbjct: 170 SSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESES 229

Query: 624 GYPMXXXXXXXXXXXXXXMKFDHFGESTTNLDNLKDLERKTDRTKRALKRTDEVQSADVE 683
                                D    S+++    +   + +D +  +    D+  S   +
Sbjct: 230 SSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSD 289

Query: 684 GLVDSKDEKDFEFQHLSD 701
              +S  E        SD
Sbjct: 290 SESESSSEDSDSTSSSSD 307



 Score = 27.9 bits (59), Expect = 6.1
 Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 3/122 (2%)

Query: 502 DKDADAKIHNISGSSEGTDSNQDNINEYILERNVCYQDSLTDSLSQELNRSIEGHSICKK 561
           D  + +       SSE +DS+  + ++   E +    DS + S S E   S E +     
Sbjct: 127 DSSSSSSDSESESSSEDSDSSSSS-SDSESESSSEGSDSSSSSSSSESESSSEDND--SS 183

Query: 562 DIKSLEKSTDSGEKSSKDAPSIDSKHKTDLMGSAMTDSTNPXXXXXXXXXXXXXXXXXDQ 621
              S  +S  S E S   + S DS+ ++   GS  + S++                  D 
Sbjct: 184 SSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDS 243

Query: 622 TS 623
            S
Sbjct: 244 ES 245


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 499  LYLDKDADAKIHNISGSSEGTDSNQDNINEYILERNVCYQD-SLTDSLSQELNRSIEGHS 557
            +Y+ K +D KI +I       D N   + EY L++   Y D S T + S   + +++  S
Sbjct: 1203 IYVLKSSDVKIRSIYDFIPTKDPNGTKLLEYQLDQTEVYLDLSGTHAASPRSSMTVKPLS 1262

Query: 558  ICKKDIKSL 566
            +C    +S+
Sbjct: 1263 LCSSGYESI 1271


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 513 SGSSEGTDSNQDNINEYILERNVCYQDSLTDSLSQELNRSIEGHSICKKDIKSLEKSTDS 572
           S  SE  DS +D  N+ + E +  +  S   S+S+E     +  +I +KD+  L+K   +
Sbjct: 90  SSPSEEEDSEEDE-NDAVSEDHENFSSSEASSISEENEDDDQSSAIPEKDMDRLKKII-N 147

Query: 573 GEKSSKD 579
           GEK   D
Sbjct: 148 GEKKLSD 154


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 6/95 (6%)

Query: 503  KDADAKIHNISGSSEGTDSNQDNINEYILERNVCYQDS---LTDSLSQELNRS---IEGH 556
            K+   K+   S  SEGT  + +  NE  +ER    Q     L   +++EL ++    + +
Sbjct: 1473 KEELEKVRQNSNKSEGTSKDTEIPNEEEMERKKVMQQEVLRLRSRIAKELQKNELLRKQN 1532

Query: 557  SICKKDIKSLEKSTDSGEKSSKDAPSIDSKHKTDL 591
             + +  +K+L+++  S E++   +   D+K   +L
Sbjct: 1533 QVLQDQVKALQETVVSSEEAESASVHADTKDLENL 1567


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 651 TTNLDNLKDLERKTDRTKRALKRTDEVQSADVEGLVDSKDEKDFEFQHLS 700
           T  LD +KD+E      K  LKR D+ Q  DVE L +   +   E   +S
Sbjct: 254 TLLLDTIKDVESYAHSLKELLKRRDQKQQ-DVEALQEYSAKLSLERDKIS 302


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 345 APSPASEQRDNLELSFTGALQLGS 368
           AP P S+QRD+ EL  TG    GS
Sbjct: 482 APEPLSQQRDSFELCTTGYRDTGS 505


>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 28/150 (18%), Positives = 73/150 (48%), Gaps = 18/150 (12%)

Query: 461 LAGNKGDLIPDRSVRVSLKASALNCISEV-VQVYPQAMTLYLD------KDADAKIHNIS 513
           L    G++  + + ++ +    LN + E+    + + +  +L+      K+   K+ N+S
Sbjct: 55  LTSASGEIATNNNRKILMPQDVLNALDEIEYPEFSKTLKKHLEAYELALKEKRLKLPNVS 114

Query: 514 GSSEGTDSNQDNINEYIL--ERNVCYQDSLTDSLSQ-ELNRSIEGHSICKKDIKSLEKST 570
                  +  D  +   L  E++   ++ + + ++Q E+ ++I+       D++ LE+  
Sbjct: 115 DVDNRKKAKIDAHDTTPLDEEKDELEEERIAEDIAQNEVEQNID-------DVEDLEEVN 167

Query: 571 DSGEKSSKDAPSIDSKHKTDLMGSAMTDST 600
           D+ + ++ ++P I++ H TD  G+ + DS+
Sbjct: 168 DTLDANA-ESPQIETIHLTDATGNPIEDSS 196


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 137 AQFLFPKLSQIVKETNEI-QLIVEALESN---LPRLLNALGEYTSDEEISELSKAILLHV 192
           A +LF  + +   E N++   IVE + ++   +  L+ ++GEY +D  IS  +KA+LL  
Sbjct: 7   ALYLF-SIDRSQDEANDVVDRIVEEIVTDRMGIVDLVTSIGEYLTDNNISVRAKAVLLLS 65

Query: 193 ET 194
           +T
Sbjct: 66  QT 67


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 480 ASALNCISEVV-QVYPQAMTLYLDKDADAKIHNISGSSEGTDSN 522
           + A+NC+S++  Q +     LY+D+   ++I   SG  E +D N
Sbjct: 766 SEAINCLSKLAFQCHETKRFLYIDEKQSSEISFTSGELEYSDPN 809


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,399,658
Number of Sequences: 5004
Number of extensions: 133999
Number of successful extensions: 499
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 20
length of query: 831
length of database: 2,362,478
effective HSP length: 79
effective length of query: 752
effective length of database: 1,967,162
effective search space: 1479305824
effective search space used: 1479305824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)