Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002250-TA|BGIBMGA002250-PA|IPR000091|Huntingtin
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0515 - 25102978-25103115,25103678-25104211,25104236-251048... 33 1.2
09_06_0171 - 21308993-21309671,21309768-21309862,21309944-213100... 32 1.6
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 32 2.2
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 31 5.0
10_08_0435 + 17905728-17905901,17906608-17906931,17907205-179073... 30 6.6
09_02_0368 - 7984894-7984905,7985250-7985301,7985947-7985969,798... 30 8.7
07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323... 30 8.7
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 30 8.7
>03_05_0515 -
25102978-25103115,25103678-25104211,25104236-25104880,
25106601-25106711
Length = 475
Score = 32.7 bits (71), Expect = 1.2
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 715 RGLVRVCIGNYLAAALNASHGDYNRWRNFNSLPKAVGDCMSAGDLVQI-ILKGLRDEIHS 773
+G C G LA + + G NRW + + C+++ D+ + +L+G+ + S
Sbjct: 321 KGNDEFCQGCCLAIS-DKLMGRVNRWGFVHVGVRGKAFCVASRDVWSLFVLRGISKLVDS 379
Query: 774 TVNHS---LSALTGLAVALSASSDWSLLVD------ALTSLVHVEANTYWLCRV 818
+ S LSA+TG A+A + W+L +D AL ++ Y++CR+
Sbjct: 380 DLTGSFCFLSAVTGGALASLVAGSWALAMDKEHKELALPVAIYSFLIGYYMCRM 433
>09_06_0171 -
21308993-21309671,21309768-21309862,21309944-21310084,
21310177-21310348,21310445-21310548,21311254-21311370
Length = 435
Score = 32.3 bits (70), Expect = 1.6
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 527 NEYILERNVCYQDSLTDSLSQELNRSIEGHSICKKDIKSLEKSTDSGEKSSKDAPSIDSK 586
++ + +R + +S S Q ++ S S K+DI + ++S G ++S+ SI+S
Sbjct: 260 SDEVEDRRTSFHESSHSSKRQSMSNS--SRSSRKEDIVAFDESNPQGRRTSRTGSSIESN 317
Query: 587 HKTD 590
H D
Sbjct: 318 HVED 321
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 31.9 bits (69), Expect = 2.2
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 134 RNQAQFLFPKLSQI-VKETNEIQLIVEALESNLPRLLNALGEYTSDEEISELSKAILLHV 192
+N F L Q+ +T +I + L SN+P L GEY S E S L + LH+
Sbjct: 1120 QNPTSISFHGLRQLRCLKTLKIYDCPKLLPSNVPSELT--GEYMSGENHSALPSLVRLHI 1177
Query: 193 ETTEASVRRGIATCIAHMCSHREALLTNVLQ 223
E +R+ ++ + H+ + +E L N Q
Sbjct: 1178 EKC-GIMRKWLSLLLQHVQALQELSLDNCKQ 1207
>07_03_0336 +
16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 30.7 bits (66), Expect = 5.0
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 479 KASALNCISEVVQVYPQAMTLYLDKDADAKIHNISGSSEGTDSNQDNINEYILERNVCYQ 538
K S +N SE V P ++ + ++KI +++ S+ G+ +N+D+ N I +
Sbjct: 496 KKSIINSNSENSNVQPNTASV---GNRNSKIDDVN-SNTGSITNKDSKNTVIKPSIGSFV 551
Query: 539 DSLTDSLSQELNRSIEGHSICKKDIKSLEKSTDSGEKSSKDAPSIDSKHKTDLMGS 594
+ +++ + N SI + S + ++ G +SKDA +ID+K T + S
Sbjct: 552 NRNAETVDVKPNIG----SITSRGDSSSDTKSNIGSVASKDAKTIDAKPSTSSITS 603
>10_08_0435 +
17905728-17905901,17906608-17906931,17907205-17907321,
17908418-17908597,17909064-17909190,17909327-17909440,
17909794-17909909
Length = 383
Score = 30.3 bits (65), Expect = 6.6
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 146 QIVKETNEIQLIVEALESNLPRLLNALGEYTSDEEISELSKAILLHVETTEASVRRGIA 204
QI E + I A SN LG+Y DE I E +KA+ L+ +A +RRG A
Sbjct: 239 QIAAELESAEDIRSACHSNRAVCFLKLGKY--DETIKECTKALELNPSYLKALLRRGEA 295
>09_02_0368 -
7984894-7984905,7985250-7985301,7985947-7985969,
7987006-7987071,7987155-7987206,7987617-7987820,
7987937-7988017,7988103-7988236
Length = 207
Score = 29.9 bits (64), Expect = 8.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 464 NKGDLIPDRSVRVSLKASALNCISEVVQVYPQAMTLYL 501
+ G+L D+ VR K NCI E+V+++ + ++YL
Sbjct: 105 HNGNLSQDQHVRKKRKTYLENCIGEIVRLWHRRHSMYL 142
>07_03_0984 -
23131468-23131679,23132082-23132209,23132300-23132365,
23134421-23134515,23135292-23135340,23135428-23135487,
23135580-23135701,23135799-23135840,23135944-23135992,
23136095-23136166,23136638-23136738,23136835-23136910,
23137002-23137081,23137196-23137307,23137391-23137454,
23137540-23137603,23138544-23138570
Length = 472
Score = 29.9 bits (64), Expect = 8.7
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 280 VDQSTDH----NIQNCVMECLTVILSKAAGAYRAAVLEKHPAR 318
++ S+DH IQ VM + +LS AG Y A+++K P+R
Sbjct: 196 LNPSSDHVLQTPIQGWVMAIVMALLSGFAGVYTEAIIKKRPSR 238
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 29.9 bits (64), Expect = 8.7
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 212 SHREALLTNVLQKVFEKLWPISRESPVVLGWFSVI-KVVFQINEFK 256
S R LL +V +K+F +W + +++P L +S+I + + + E++
Sbjct: 106 SGRSLLLISVAKKLFSHIWEVVKDAPSFLIEYSIILRQLLTVKEYR 151
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,734,152
Number of Sequences: 37544
Number of extensions: 793830
Number of successful extensions: 2229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2223
Number of HSP's gapped (non-prelim): 14
length of query: 831
length of database: 14,793,348
effective HSP length: 88
effective length of query: 743
effective length of database: 11,489,476
effective search space: 8536680668
effective search space used: 8536680668
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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