Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002250-TA|BGIBMGA002250-PA|IPR000091|Huntingtin
(831 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006777-3|AAK72309.1| 345|Caenorhabditis elegans Hypothetical ... 36 0.16
Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical pr... 35 0.27
Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical pr... 33 1.1
Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical pr... 31 2.5
Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical pr... 31 2.5
Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical pr... 31 2.5
U40030-1|AAR12977.1| 235|Caenorhabditis elegans Hypothetical pr... 31 2.5
Z79756-6|CAB02115.1| 388|Caenorhabditis elegans Hypothetical pr... 31 4.4
AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical ... 31 4.4
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 30 7.7
U41543-4|AAM69116.1| 575|Caenorhabditis elegans Hypothetical pr... 30 7.7
U41543-3|AAB37024.1| 572|Caenorhabditis elegans Hypothetical pr... 30 7.7
>AC006777-3|AAK72309.1| 345|Caenorhabditis elegans Hypothetical
protein Y46H3D.6 protein.
Length = 345
Score = 35.5 bits (78), Expect = 0.16
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 11/181 (6%)
Query: 120 CLGECWLRPGVGKIRNQAQFLFPKLSQIVKETNEIQLIVEALESNLPRLLNALGEYTSDE 179
C G C L V + R A+ + K Q+ T+ + L A++S P + L +
Sbjct: 49 CSGSCKLENQVLR-RLCAKCRYEKCVQVGMRTSAV-LSRLAVKSE-PEFESLLDQIKLAY 105
Query: 180 EISELSKAILLHVETTEASVRRGIATCIAH-MCSHREALLTNVLQKVFEKLWPISRESPV 238
E ++++ H TE + + I H MCS L++ +F+ L PIS V
Sbjct: 106 ERLQMARKEAFH---TEGHIPKMIKYQEMHKMCSFDLQLVSQHFTSIFQSLTPISEAQKV 162
Query: 239 VLGWFSVIKVVFQINEFKKFAESD--LFNVHDYMELYNLCVNYVD-QSTDHNIQNCVMEC 295
LG + + V ++ ESD +F DY++ N+ Y + D +I + V
Sbjct: 163 TLGEYFTVPFVLLDGSYRS-VESDYIVFPNGDYVDAQNIDAFYQNPDEKDESIGSSVASI 221
Query: 296 L 296
L
Sbjct: 222 L 222
>Z34802-6|CAB54282.1| 594|Caenorhabditis elegans Hypothetical
protein M88.6b protein.
Length = 594
Score = 34.7 bits (76), Expect = 0.27
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 129 GVGKIRNQAQFLFPKLSQIVKETNEIQLIVEALESNLPRLLNALGEYTSDEEISELSKAI 188
G KI N FPKL ++V N I + +LP L+ AL + E I ++
Sbjct: 255 GSNKISNVEMKSFPKLEKLVLNNNTIDSMKSIKLKDLPSLVVALFDRNKIESIGDMDMFG 314
Query: 189 LLHVETTE--ASVRRGIATCIAHMCSHREALLTNVLQKVFEKLWPISRESP 237
L + E + R ++ H L+T +LQ + ++ +S SP
Sbjct: 315 LTRSDRIETLSLARNNLSQISPKAFQHTPNLITLLLQ--YNQIEELSSHSP 363
>Z34802-5|CAA84337.1| 610|Caenorhabditis elegans Hypothetical
protein M88.6a protein.
Length = 610
Score = 32.7 bits (71), Expect = 1.1
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Query: 129 GVGKIRNQAQFLFPKLSQIVKETNEIQLIVEALESNLPRLLNALGEYTSDEEISELSKAI 188
G KI N FPKL ++V N I + +LP L+ AL + E I ++
Sbjct: 255 GSNKISNVEMKSFPKLEKLVLNNNTIDSMKSIKLKDLPSLVVALFDRNKIESIGDMDMFG 314
Query: 189 LLHVETTE--ASVRRGIATCIAHMCSHREALLTNVLQ 223
L + E + R ++ H L+T +LQ
Sbjct: 315 LTRSDRIETLSLARNNLSQISPKAFQHTPNLITLLLQ 351
>Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 663 KTDRTKRALKRTDEVQSADVEGLVDSKDEKDFEFQHLSDVFLLLEGHCDPQIR 715
K + + LK T E+Q A++E + + K E D +F++L + P+I+
Sbjct: 521 KKEEELKKLKATVELQQAEIEKMHEDKKEADQKFKNLEKEYAAYRDEQRPEIK 573
>Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical
protein C14H10.2b protein.
Length = 412
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 663 KTDRTKRALKRTDEVQSADVEGLVDSKDEKDFEFQHLSDVFLLLEGHCDPQIR 715
K + + LK T E+Q A++E + + K E D +F++L + P+I+
Sbjct: 187 KKEEELKKLKATVELQQAEIEKMHEDKKEADQKFKNLEKEYAAYRDEQRPEIK 239
>Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 31.5 bits (68), Expect = 2.5
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 663 KTDRTKRALKRTDEVQSADVEGLVDSKDEKDFEFQHLSDVFLLLEGHCDPQIR 715
K + + LK T E+Q A++E + + K E D +F++L + P+I+
Sbjct: 521 KKEEELKKLKATVELQQAEIEKMHEDKKEADQKFKNLEKEYAAYRDEQRPEIK 573
>U40030-1|AAR12977.1| 235|Caenorhabditis elegans Hypothetical
protein T13C2.4 protein.
Length = 235
Score = 31.5 bits (68), Expect = 2.5
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 525 NINEYILERNVCYQDSLTDSLSQELNRSIEGHSICKKDIKSLEKSTDSGEKSSKDAPSID 584
+I EY++E + + ++ S S +NRS+E H I KK ++E S SG + P++D
Sbjct: 33 SIYEYLMEYSSKLRFAV--SCSSNMNRSMEAHGILKKRGFNIE-SYGSGNQVKMPGPTVD 89
>Z79756-6|CAB02115.1| 388|Caenorhabditis elegans Hypothetical
protein F53C11.8 protein.
Length = 388
Score = 30.7 bits (66), Expect = 4.4
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 430 HDAGFKINIGSVADDDVPLKYCVRLLASKFLLAGNKGDLIPDRSVRVSLKASALNCISEV 489
+D F++ +G+V+D V + C S L G+L+ S + A+A+ I +
Sbjct: 68 NDIKFRLAVGTVSD--VSVNPCAANKVSIVQLKDETGELVETASFPMEFPANAVGFIPDP 125
Query: 490 VQVYPQAMT-----LYLDKDADAKIH 510
VYP + L L + D K+H
Sbjct: 126 DNVYPDLIATTSDCLRLWRVVDGKVH 151
>AL110479-9|CAB60315.3| 583|Caenorhabditis elegans Hypothetical
protein Y105C5B.11 protein.
Length = 583
Score = 30.7 bits (66), Expect = 4.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 649 ESTTNLDNLKDLERKTDRTKRALKRTDEVQSADVEGLVDSKDEKDFEFQHLSD 701
E T+L+ +K LE+K KRA K E +E L K+ Q D
Sbjct: 436 ELKTSLNKIKILEKKLSAEKRAFKENQETWEKKLEELQTELQAKERTIQEFQD 488
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 29.9 bits (64), Expect = 7.7
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 517 EGTDSNQDNINEYILERNVCYQDSLTDSLSQELNRSIEGHSICKKDIKSLEKSTDSGEK 575
E +++ + E +L R + D L + L + RS E CK D+ +LEK + EK
Sbjct: 292 EALRDHEEALKEELLARQDEFHDRLQE-LQLQSKRSREDLVSCKNDVTALEKKLHNKEK 349
>U41543-4|AAM69116.1| 575|Caenorhabditis elegans Hypothetical
protein F46H5.7b protein.
Length = 575
Score = 29.9 bits (64), Expect = 7.7
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 504 DADAKIHNISGSSEGTDSNQDNINEYILERNVCYQDSLTDSLSQELNRSIEGHSICKKDI 563
DA + NIS SEG DS ++ N+ LE+ D L + +E + + K++
Sbjct: 147 DAQPENVNISEESEGRDSEKEK-NDRQLEKLRNRNDELKIRV-KEYKSDLSAAQLKVKNL 204
Query: 564 -KSLE--KSTDSGEKSSKDAPSIDSKHKTD 590
K LE +S DS EK + ID K D
Sbjct: 205 EKKLESAQSADSEEKFVRIDSEIDEKRSQD 234
>U41543-3|AAB37024.1| 572|Caenorhabditis elegans Hypothetical
protein F46H5.7a protein.
Length = 572
Score = 29.9 bits (64), Expect = 7.7
Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 504 DADAKIHNISGSSEGTDSNQDNINEYILERNVCYQDSLTDSLSQELNRSIEGHSICKKDI 563
DA + NIS SEG DS ++ N+ LE+ D L + +E + + K++
Sbjct: 147 DAQPENVNISEESEGRDSEKEK-NDRQLEKLRNRNDELKIRV-KEYKSDLSAAQLKVKNL 204
Query: 564 -KSLE--KSTDSGEKSSKDAPSIDSKHKTD 590
K LE +S DS EK + ID K D
Sbjct: 205 EKKLESAQSADSEEKFVRIDSEIDEKRSQD 234
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.317 0.132 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,997,609
Number of Sequences: 27539
Number of extensions: 704419
Number of successful extensions: 2210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2204
Number of HSP's gapped (non-prelim): 12
length of query: 831
length of database: 12,573,161
effective HSP length: 87
effective length of query: 744
effective length of database: 10,177,268
effective search space: 7571887392
effective search space used: 7571887392
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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