GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002250-TA|BGIBMGA002250-PA|IPR000091|Huntingtin
         (831 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   2.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 476 VSLKASALNCISEVVQVYPQAMTLYLDKDADAKIHNISGS--SEGTDSNQDNINEYILER 533
           VSL   A++  + +V +     TL + ++AD   H +S    +  +D   D      L+ 
Sbjct: 188 VSLTVQAMDSTNTMVYMVDNKNTLIIYQNADDSFHRLSSHTLNHNSDKMSDQQENLTLKE 247

Query: 534 --NVCYQDSLTDSLSQELNRSIEGHSICKKDIKSLEKSTDSG 573
             N  Y  +L+         S    ++   + +SL KS + G
Sbjct: 248 VDNKVYGMALSPVTHNLYYNSPSSENLYYVNTESLMKSENQG 289


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,015
Number of Sequences: 429
Number of extensions: 7426
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 1
length of query: 831
length of database: 140,377
effective HSP length: 63
effective length of query: 768
effective length of database: 113,350
effective search space: 87052800
effective search space used: 87052800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)