GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002249-TA|BGIBMGA002249-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (130 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    29   0.18 
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   0.54 
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    27   1.2  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    25   2.9  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    25   3.8  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    24   8.7  

>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 29.5 bits (63), Expect = 0.18
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 91  FRAAFRKTLD-SCCRELTTAFSGHYAITVPSPAGIFWR 127
           F+  ++ TL+ S C + +TAF     +T+P P    WR
Sbjct: 432 FQGMYKSTLECSICYQKSTAFDPFMYLTLPLPTSAKWR 469


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 312

 Score = 27.9 bits (59), Expect = 0.54
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 13 MQPMASSKMKRERKAARTLGIIMSAFLACWLPFFLWYIITALCGD 57
          M      K +R  K  +TLG++  A +     + +W  I  +C D
Sbjct: 1  MSTNLEEKQRRFSKLQKTLGVVFPAAILLSTGYTVWVFIALICVD 45


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 34  IMSAFLACWLPFFLWYIITALCGDDCPSPPPVVAAVFWVGYFNSALNPLIYAY-FNRDFR 92
           ++S  L+  L +++ YII  L   +   PP V     W+ +  SA+   +  Y F R+ R
Sbjct: 5   LVSILLSIALAWYVGYIINQLTSRNSKRPPIV---FHWIPFVGSAVAYGMDPYVFFRECR 61

Query: 93  AAFRKTLDSCCR-ELTTAFSG 112
           A +       C     TAF G
Sbjct: 62  AKYGDVFTFVCMGRKMTAFLG 82


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 41 CWLPFFLWY 49
          CWL FF+WY
Sbjct: 71 CWLYFFIWY 79


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 76  NSALNPLIYAYFNRDFRAAFRKTLDSCCRELTTAFSG 112
           N  L  L Y YFN + +     T  + C+ + TAF G
Sbjct: 536 NRMLGLLSYLYFNCNLQRWDFTTSLTACQPIATAFKG 572


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 23.8 bits (49), Expect = 8.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 79  LNPLIYAYFNRDFRAAFRKTLD 100
           L  L+Y   N  F+A  RK LD
Sbjct: 48  LGQLVYGVLNLSFQAPMRKKLD 69


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.330    0.139    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 562,958
Number of Sequences: 5004
Number of extensions: 20844
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 47
Number of HSP's gapped (non-prelim): 6
length of query: 130
length of database: 2,362,478
effective HSP length: 66
effective length of query: 64
effective length of database: 2,032,214
effective search space: 130061696
effective search space used: 130061696
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 49 (23.8 bits)