GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002249-TA|BGIBMGA002249-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (130 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0698 - 20765305-20768526                                         29   1.6  
08_02_0233 + 14593639-14594468,14594480-14594986,14595362-145958...    28   2.8  
09_04_0743 - 19862847-19864745,19865875-19866912                       27   4.8  
11_06_0549 + 24868344-24868930,24869740-24869957,24870018-248701...    26   8.5  
02_05_0215 + 26833213-26833599                                         26   8.5  
02_01_0575 - 4264136-4264200,4264589-4264652,4264760-4264879,426...    26   8.5  

>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 55  CGDDCPSPPPVVAAVFWVGYFNSALNPLIYAYFNRDFRAAFRKTLDSCCREL 106
           C D     PPV+ ++  + Y N AL  L + Y +R  +      L  CC ++
Sbjct: 491 CCDSAKCGPPVIYSLVDI-YLNRALALLPHRYDDRHLKGILCNILTQCCPDV 541


>08_02_0233 +
           14593639-14594468,14594480-14594986,14595362-14595856,
           14596592-14596662,14597116-14597199,14597328-14597446,
           14598029-14598109,14598397-14598411
          Length = 733

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 86  YFNRDFRAAFRKTLDSCCRELTTAFSGHYAITVPSP 121
           Y++RD  AA   T  +C     ++F GHY++T P+P
Sbjct: 260 YYSRD--AASSSTRPACA---PSSFPGHYSLTSPAP 290


>09_04_0743 - 19862847-19864745,19865875-19866912
          Length = 978

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 96  RKTLDSCCRELTTAFSGHYAITVP 119
           R+    CC   ++ F+GH+++  P
Sbjct: 696 RRGFSECCESSSSCFAGHFSVRAP 719


>11_06_0549 +
           24868344-24868930,24869740-24869957,24870018-24870175,
           24870202-24870633,24870717-24871064
          Length = 580

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 59  CPSPPPVVAAVFWVGYFNSALNPLIYAYFNRDFRAAFRKTLDSC 102
           CP   P+  ++   G +   L  L     N+D    FR  LD C
Sbjct: 498 CPQQEPITNSI--AGLYYDTLLKLTRKRVNKDVNQIFRDILDKC 539


>02_05_0215 + 26833213-26833599
          Length = 128

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 37 AFLACWLPFFLWYIITALCGDDCPSP 62
          AFL   L   L++ + + CG  CP+P
Sbjct: 5  AFLLVALNLVLFFTVASACGKYCPTP 30


>02_01_0575 -
          4264136-4264200,4264589-4264652,4264760-4264879,
          4264906-4265002,4265365-4265437,4265534-4265630,
          4265736-4266007,4266114-4266240,4266902-4267139,
          4267508-4267620,4267722-4267762,4268569-4268788
          Length = 508

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 52 TALCGDDCPSPPP 64
          TA  GDD PSPPP
Sbjct: 3  TAAAGDDPPSPPP 15


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.330    0.139    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,988,602
Number of Sequences: 37544
Number of extensions: 154214
Number of successful extensions: 506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 6
length of query: 130
length of database: 14,793,348
effective HSP length: 74
effective length of query: 56
effective length of database: 12,015,092
effective search space: 672845152
effective search space used: 672845152
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 55 (26.2 bits)