GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002248-TA|BGIBMGA002248-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (263 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    29   0.69 
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    28   1.2  
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    27   3.7  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    27   3.7  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   3.7  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    26   6.4  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   6.4  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   6.4  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   8.5  

>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 112 IWAMCFNF-SVEITNGEWL-FGYFMCDVWNSLDVYFSSASIL 151
           +WA  +NF  + I  G +L +G ++  +W S  + FSS S+L
Sbjct: 802 VWACIYNFVMIPIAMGFFLPWGIYLNPMWASAAMMFSSLSVL 843


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 179 LGIMLAVVWCSPALVSFLPIFMGWYTTEDHLDFRRRYPKVCSFTVNKVYAVISSSISF 236
           +G+ L  +     L+ F PIF+ W+  E  L F R+ P  C F    +  ++ +S ++
Sbjct: 174 VGLHLQRILAILLLIQF-PIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAY 230


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)

Query: 143 VYFSSASILHLCCISVDRYYAIVQPL 168
           + FS A ILH+ C++  R + ++ P+
Sbjct: 21  ILFSIAFILHVACLAFTRKWLVIVPI 46


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 137 VWNSLDVYFSSASILHLCCISVDRYYAIVQPL 168
           VW    VYFS+   + + CI++ + Y+   PL
Sbjct: 816 VWCDNFVYFSNFKNISIICIAMTKIYSFDSPL 847


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 62  ILKCMIMLFIILAAIFGNLLVIVSVMRHR---KLRVITNYFVVSLALADMLVAIWAMCFN 118
           IL  +I LFI    I   ++  +S+       +L  + +  + S+AL  ++V ++     
Sbjct: 41  ILPIIITLFIFSFVISRMIIFFISLFNKNTYCELPAVADAIINSIALVCIIVILYFSSRK 100

Query: 119 FSVEITNGE 127
            +VEI  GE
Sbjct: 101 LNVEIRRGE 109


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 172 LIMTTAKLGIMLAVVWCSPALVSFLPIF 199
           LI     +G+ +A+ WC PA +  + +F
Sbjct: 341 LISIPLIIGVHVAIAWCDPAWLKVIILF 368


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 110 VAIWAMCFNFSVEITNGEWLFGY---FMCDVW 138
           + +W+M F+F + I NG +   +   F C+++
Sbjct: 127 ICLWSMIFHFIIAIANGVYFVKHITKFSCEIF 158


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 146 SSASILHLCCISVDRYYAIVQPLDYPLI 173
           +++ +L LCCI  + + A   PL +P++
Sbjct: 231 AASRVLELCCILDNHWSASQPPLPFPIL 258


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 200 MGWYTTEDHLDFRRRYPKVCSFTVNKVYAVISSSIS 235
           +G+Y    + D  R   ++  F VNK+  VI+ ++S
Sbjct: 927 IGFYVGRTYHDLERAQREMIKFIVNKMEPVINQNLS 962


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.332    0.143    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,157,256
Number of Sequences: 5004
Number of extensions: 46662
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 9
length of query: 263
length of database: 2,362,478
effective HSP length: 71
effective length of query: 192
effective length of database: 2,007,194
effective search space: 385381248
effective search space used: 385381248
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 53 (25.4 bits)