GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002248-TA|BGIBMGA002248-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    28   8.8  
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021...    28   8.8  
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022...    28   8.8  

>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 8/96 (8%)

Query: 57  IVFLIILKCMIMLFIILAAIFGNLLVIVSVMRHRKL--RVITNYFVVSLALADML--VAI 112
           + F ++   M  LF  L  + G  +++   +   +L  R I N   V+    +++  +AI
Sbjct: 325 VFFKVLTNGMYRLFSPLRRLPGIHVMVQMALSFLRLFFRGIINLVTVANISVNLINVIAI 384

Query: 113 WAMCFNFSVEITNGEWLFGYFMCDVWNSLDVYFSSA 148
           W + F +SV+I   + LFG     ++  L++ F+S+
Sbjct: 385 WPLFFGWSVDICASQ-LFGE---TIYQKLELLFASS 416


>02_04_0116 +
           19901546-19901737,19901825-19901899,19902034-19902115,
           19902219-19902298,19903279-19903482,19903625-19903750,
           19903872-19903985,19904802-19904918
          Length = 329

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 11/96 (11%)

Query: 93  RVITNYFVVSLALADMLVAIWAMCFNF-SVEITNGEWLFGYFMCDVWNSLDVYFSS---- 147
           R  T+YF+ +L   DM + +    F+F S+ IT   W   Y    + N + +++S     
Sbjct: 146 RAFTSYFI-ALYSYDMSIPLIQKTFHFCSIFITIQLWGHIYHKRHLLNLMLIHYSKYYGQ 204

Query: 148 -----ASILHLCCISVDRYYAIVQPLDYPLIMTTAK 178
                 +  HL  +  DR    +  L YPLI    K
Sbjct: 205 SDTLKTTFSHLAWVQTDRKSGGLGDLKYPLISDVTK 240


>01_06_1149 -
           34901338-34901466,34901707-34901838,34901940-34902290,
           34902301-34902619,34902756-34902784,34903641-34903715,
           34903799-34903900,34904002-34904120,34904752-34904875,
           34904976-34905026,34905143-34905241,34905751-34905861
          Length = 546

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 103 LALADMLVAIWAMCFNFSVEITNGEWLFGYF 133
           + +  ML+     CF FS  I  G +LF YF
Sbjct: 1   MGIVSMLIDFSGFCFGFSAGIVIGYFLFIYF 31


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.332    0.143    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,800,092
Number of Sequences: 37544
Number of extensions: 256897
Number of successful extensions: 590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 589
Number of HSP's gapped (non-prelim): 3
length of query: 263
length of database: 14,793,348
effective HSP length: 81
effective length of query: 182
effective length of database: 11,752,284
effective search space: 2138915688
effective search space used: 2138915688
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (22.0 bits)
S2: 59 (27.9 bits)