GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002246-TA|BGIBMGA002246-PA|IPR006560|AWS,
IPR000313|PWWP, IPR001214|SET, IPR003616|Post-SET zinc-binding region,
IPR001965|Zinc finger, PHD-type, IPR000637|HMG-I and HMG-Y,
DNA-binding
         (2199 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      28   0.62 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      28   0.62 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   1.9  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   4.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   7.6  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   7.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 17/80 (21%), Positives = 37/80 (46%)

Query: 665 SPLTVAGNSDTEKDMLEDDIFTKDFEDNQELNYKRDVKETDLEKSDIKSIAEQSKHFVVS 724
           +P T+      + + L  D+  K  ++N +       KET+LEKS++    +  K+   +
Sbjct: 279 APFTIVEPKLNKHEDLPQDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCKN 338

Query: 725 MNMDKTMNTEDKISDDSNNL 744
            +  K   +++  ++  N L
Sbjct: 339 EDETKNHYSKNTYNEQGNKL 358


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 17/80 (21%), Positives = 37/80 (46%)

Query: 665 SPLTVAGNSDTEKDMLEDDIFTKDFEDNQELNYKRDVKETDLEKSDIKSIAEQSKHFVVS 724
           +P T+      + + L  D+  K  ++N +       KET+LEKS++    +  K+   +
Sbjct: 171 APFTIVEPKLNKHEDLPQDLSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCKN 230

Query: 725 MNMDKTMNTEDKISDDSNNL 744
            +  K   +++  ++  N L
Sbjct: 231 EDETKNHYSKNTYNEQGNKL 250


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
            protein protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 1090 KKEVATKISEEKTSDQLI-----EKVQSSTETKQNSKEIQSSLSRLRLKINGSSPMKSPR 1144
            ++EVA KI+  ++  Q+       K +   + +QN    +++ S  ++K + +SP  +PR
Sbjct: 157  REEVAVKINLPESRVQVWFKNRRAKCRQQLQQQQNKSASRTTTSPTKVKASKASPAAAPR 216

Query: 1145 RVDSQAG 1151
             V +  G
Sbjct: 217  SVATPTG 223


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
            castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 18/59 (30%), Positives = 25/59 (42%)

Query: 1111 QSSTETKQNSKEIQSSLSRLRLKINGSSPMKSPRRVDSQAGDENVDKNSPLHKMKEELE 1169
            Q S E   N  +I+      R KI  +S  K+P  +   A         PL K +EEL+
Sbjct: 260  QLSAELGLNEAQIKIWFQNKRAKIKKASGTKNPLALQLMAQGLYNHSTIPLTKEEEELQ 318


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 94  KAQSPVYKMHASNSPMKMESPKRQIEAFVAQGQNSQQENISVNCFDSDDISP 145
           + + P  K+H  NSP+  +    Q+  ++    +  Q+      F  +DI+P
Sbjct: 500 RVRKPTKKLHLKNSPISKKVRPPQVLCYIT---SWSQKRPGAGKFTPEDINP 548


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 20/82 (24%), Positives = 29/82 (35%)

Query: 349 SEKKQPLWMTSVEEAEMLLREPKRLRIDLLNEMLVRSRTSKHLPKGHKSGKISRADSDVS 408
           S +K P     ++   ++    +R R   LNE     R S       K  KI        
Sbjct: 83  SRRKAPQSFEDIQHQRVMANVRERQRTQSLNEAFASLRKSIPTMPSDKLSKIQTLKLAAR 142

Query: 409 LSESLYDTLFSEDDGKPDEDGN 430
             + LY  L +E+    D  GN
Sbjct: 143 YIDFLYHVLSNENALDVDLIGN 164


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.129    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,671
Number of Sequences: 317
Number of extensions: 19981
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 9
length of query: 2199
length of database: 114,650
effective HSP length: 68
effective length of query: 2131
effective length of database: 93,094
effective search space: 198383314
effective search space used: 198383314
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)