Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002246-TA|BGIBMGA002246-PA|IPR006560|AWS,
IPR000313|PWWP, IPR001214|SET, IPR003616|Post-SET zinc-binding region,
IPR001965|Zinc finger, PHD-type, IPR000637|HMG-I and HMG-Y,
DNA-binding
(2199 letters)
Database: mosquito
2123 sequences; 516,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U03849-1|AAA53488.1| 388|Anopheles gambiae putative nucleic aci... 32 0.19
U42429-1|AAB54088.1| 596|Anopheles gambiae engrailed protein. 31 0.44
U42214-1|AAB58461.1| 596|Anopheles gambiae engrailed protein. 31 0.44
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 30 0.59
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein. 28 3.1
>U03849-1|AAA53488.1| 388|Anopheles gambiae putative nucleic acid
binding protein protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.19
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 1719 CFICA----LGGSLICCEYCPTSFHAECLNIDPPE 1749
CF CA G +I C YC +FH C + PPE
Sbjct: 16 CFSCAEPLEATGCIISCAYCDATFHRGCCKL-PPE 49
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 1424 ENAGRLVKCRGCNAMFHVDCTKKQAENIE 1452
E G ++ C C+A FH C K E I+
Sbjct: 24 EATGCIISCAYCDATFHRGCCKLPPELID 52
>U42429-1|AAB54088.1| 596|Anopheles gambiae engrailed protein.
Length = 596
Score = 30.7 bits (66), Expect = 0.44
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 1034 SNKNRSRNVEYVAAGEDIASIYSDERSRSPIISMDKQEEMLRTRQKTNADSTKSDSK-KE 1092
S K+ S N + + YSD S P KQ + ++ + S+++ +
Sbjct: 453 STKDGSENGSNLWPAWVYCTRYSDRPSSGPRYRRTKQPKKRADSEEKRPRTAFSNAQLQR 512
Query: 1093 VATKISEEKTSDQLIEKVQS--STETKQNSKEIQSSLSRLRLKINGSSPMKSPRRVDSQA 1150
+ + +E + L EK + S E N +I+ R KI SS K+P + A
Sbjct: 513 LKNEFNENR---YLTEKRRQTLSAELGLNEAQIKIWFQNKRAKIKKSSSEKNPLALQLMA 569
Query: 1151 GDENVDKNSPLHKMKEELEL 1170
PL K +EELE+
Sbjct: 570 QGLYNHSTVPLTKEEEELEM 589
>U42214-1|AAB58461.1| 596|Anopheles gambiae engrailed protein.
Length = 596
Score = 30.7 bits (66), Expect = 0.44
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 1034 SNKNRSRNVEYVAAGEDIASIYSDERSRSPIISMDKQEEMLRTRQKTNADSTKSDSK-KE 1092
S K+ S N + + YSD S P KQ + ++ + S+++ +
Sbjct: 453 STKDGSENGSNLWPAWVYCTRYSDRPSSGPRYRRTKQPKKRADSEEKRPRTAFSNAQLQR 512
Query: 1093 VATKISEEKTSDQLIEKVQS--STETKQNSKEIQSSLSRLRLKINGSSPMKSPRRVDSQA 1150
+ + +E + L EK + S E N +I+ R KI SS K+P + A
Sbjct: 513 LKNEFNENR---YLTEKRRQTLSAELGLNEAQIKIWFQNKRAKIKKSSSEKNPLALQLMA 569
Query: 1151 GDENVDKNSPLHKMKEELEL 1170
PL K +EELE+
Sbjct: 570 QGLYNHSTVPLTKEEEELEM 589
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 30.3 bits (65), Expect = 0.59
Identities = 25/115 (21%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query: 1067 MDKQEEM-LRTRQKTNADSTKSDSKKEVATKISEEKTSDQLIEKVQSSTETKQNS-KEIQ 1124
+ KQ+E+ + ++K AD + KKEV E +Q I +V++ + + +
Sbjct: 253 ISKQQELNIIEKRKEEADEVLKEKKKEVGKMTREMAKKEQEIREVEAEMSKRHPMFIKAK 312
Query: 1125 SSLSRLRLKINGS-SPMKSPRRVDSQAGDENVDKNSPLHKMKEELELETTSIDSE 1178
++ + K++G+ ++ RR D +A ++ K L +E+E++ + ++E
Sbjct: 313 EKVAHTQKKLDGALKTLEQARRAD-EAHQADIKK---LVDELQEVEVKRAAFENE 363
Score = 26.6 bits (56), Expect = 7.2
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 1031 SKDSNKNRSRNVEYVAAGEDIASIYSDERSRS-PIISMDKQE-EMLRTRQ---KTNADST 1085
SKD++KN R V ED + +R I DK++ E+++ + KT D
Sbjct: 838 SKDTSKNVQRWERAVQDDEDSLETFKQAEARQRQEIEKDKEKIELMKQEKAAHKTLVDQM 897
Query: 1086 KSD---SKKEVATKISEEKTSDQLIEKVQSSTETKQNSKE 1122
+ + +++EV E Q I ++S E+ ++ ++
Sbjct: 898 EEEMAKARREVQALAKELAAIHQSIANIESRIESMKSKRQ 937
>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
Length = 1009
Score = 27.9 bits (59), Expect = 3.1
Identities = 46/199 (23%), Positives = 82/199 (41%), Gaps = 28/199 (14%)
Query: 1505 DAELFEREMKVKMKELLDSNEEIQYDCYSNEDSILWANSIAGRC-----EIVDVQLKRRD 1559
+ E+ R + K +++ + Y+C N+ + + NSI +C E + QL +
Sbjct: 124 NGEVTTRSVGEKWFNMVNETTCMNYECLRNDANETFINSIGIQCNTTCPEGFEAQLSEQH 183
Query: 1560 STKEPDYSDFKCNN-----CQKYDTPICFVCKLAVTKNG----SSLRQRC-HVGHCHKYY 1609
+ S K N+ Q + +P + V +NG SS R++C VG C +
Sbjct: 184 CCPQCVQSQCKFNDQFYREGQSWASPDGCIVYRCVKENGFLSISSSRKQCPAVGDCPDQH 243
Query: 1610 HLE--CLE--HWPQTQLSSGEPSMKNKRVNE---HFETLTCPRHVC-HTC-VSDDPRGCK 1660
+E C ++ + Q++ G + E +E L+ H C C + P C
Sbjct: 244 IVERDCCRVCNYTEAQMAPGLTTASPVEPEEGVDFYEELSYDNHPCKRACTLGRKPETCY 303
Query: 1661 TRFSGD---KLAR-CVRCP 1675
RF + L++ C CP
Sbjct: 304 YRFRLEWYRTLSKACYNCP 322
Database: mosquito
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 516,269
Number of sequences in database: 2123
Lambda K H
0.312 0.129 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,048,567
Number of Sequences: 2123
Number of extensions: 82841
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 11
length of query: 2199
length of database: 516,269
effective HSP length: 75
effective length of query: 2124
effective length of database: 357,044
effective search space: 758361456
effective search space used: 758361456
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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