Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002245-TA|BGIBMGA002245-PA|IPR000276|Rhodopsin-like GPCR
superfamily
(269 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 32 0.100
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.23
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 29 0.53
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 29 0.93
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 2.8
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 2.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 3.7
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.0
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch... 26 5.0
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 5.0
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 26 5.0
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.6
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 6.6
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 25 8.7
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 25 8.7
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 8.7
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 31.9 bits (69), Expect = 0.100
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 211 NENNKQIQILNLDVKTNSVYSITLDVSKEGKNRFVCVPAQDRDNKNIFIYDYNTK 265
NEN+ +IQ++N D+ + V+ LD N + D D +N+FIYD + K
Sbjct: 812 NENSFRIQVINDDIYPSYVH---LD----SNNYAIAAARGDSDGENVFIYDSDIK 859
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 30.7 bits (66), Expect = 0.23
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 154 SSQKNLLNNSKKIKEEKVNPIKIGEIINVENTRRNSMKFIAALNEDVQIDNEVEIADNEN 213
S QK+L +K +++ +N ++ E + +S+K + D+ + VE NE
Sbjct: 178 SKQKSLFQCTKDLEKRYIN--RVHRSSETELVQLSSIKVLDRFLSDIYL---VEAEKNEE 232
Query: 214 NKQIQIL---NLDVKTNSVYSITLDVSKEGKN 242
+ +L N DV +S S+TL + K KN
Sbjct: 233 KCTVLLLKRSNTDVDNSSSLSLTLPLCKFTKN 264
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 213 NNKQIQILNLDVKTNSVYSITLDVSKEGKNR--FVCVP 248
+NKQI++LN +N +Y + +S++ +N F C+P
Sbjct: 672 SNKQIEVLNPTKHSNHLYILQSKISQQFQNDGIFACIP 709
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 28.7 bits (61), Expect = 0.93
Identities = 16/71 (22%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 164 KKIKEEKVNPIKIGEIINVENTRRNSMKFIAAL-NEDVQIDNEVEIADNENNKQIQILNL 222
K ++E+K P+K E I+ + N +F+A+L + + E+E N +++ +
Sbjct: 189 KPLREKKKKPLKSSEEISKDMGSYNLPRFLASLIDASLNDTKEIEFV-TSNKEELGLEGR 247
Query: 223 DVKTNSVYSIT 233
D+ T+ + ++
Sbjct: 248 DMSTSGINQLS 258
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 180 INVENTRRNSMKFIAALNEDV-QIDNEVEIADNENNKQIQILNLDVKTNSVYSITLDVSK 238
I E+ +++ + I + +I + +I + N K I + D++ + V + +++ +
Sbjct: 767 IETESGKKHQLFMITHVEAGTPRILTDGDIIISANGKSITRIR-DLQVDDVTEVDMEILR 825
Query: 239 EGKNRFVCVPAQDRDN 254
EGK + V VP DN
Sbjct: 826 EGKVQTVKVPTFPSDN 841
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 182 VENTRRNSMKFIAALNEDVQIDNEVEIAD 210
+ENT+ + K I +LN+ V +N ++I D
Sbjct: 342 IENTKADIKKSIRSLNKAVSPENSIDIED 370
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 168 EEKVNPIKIGEIINVENTRRNSMKFIAALNEDVQ 201
+E+VN +KI E+ + N R + + +LNE +
Sbjct: 1615 QEEVNIMKIKELTSTVNKYREQLAMVQSLNEHAE 1648
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 150 SNRVSSQKNLLNNSKKIKEEKVNPIKIGEIINVENTRRNSMKFIAALNEDVQIDNEV-EI 208
S R+ ++K K K+ PI + +TR + ++A+ Q DN V +I
Sbjct: 128 SARLWAEKRRFLLQKLGKDPNSKPIDYKSSMASSSTRSSQSSQVSAIQPQSQDDNRVSDI 187
Query: 209 ADNENNKQIQILNLDVKT 226
EN +++ + V +
Sbjct: 188 RQMENRRELNVKRRSVSS 205
>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
subfamily|Schizosaccharomyces pombe|chr 1|||Manual
Length = 887
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 184 NTRRNSMKFIAALNEDVQIDNEVEIADNENNKQIQILNLDVKTNSVYSITLDVS 237
N +R+ + + ID++VEI++ + I + N D+ S ++ VS
Sbjct: 759 NAKRSKTDIRSWFEKKQPIDSDVEISEPSRSASIMVANKDLNDRSFETVNRIVS 812
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 168 EEKVNPIKIGEIINVENTRRNSMKFIAALNEDVQIDNEVEIADNENNKQIQIL 220
+E P G++ E+T+ I + + +NE+E+ +NE QIQIL
Sbjct: 706 DETQEPQVGGDVKATEHTQPTKTPAIVIYDYSPEEENEIELVENE---QIQIL 755
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 176 IGEIINVENTRRNSMKFIAALNEDVQIDNEVEIADNENNKQIQILNLD-VKTNSVYSITL 234
IG + +E R+ + ++A NE+ +I D + +I+ L LD + SVY
Sbjct: 54 IGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFLRLDLLDFESVYQAAE 113
Query: 235 D-VSKEGK 241
++KE K
Sbjct: 114 SFIAKEEK 121
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 204 NEVEIADNENNKQIQILNLDV-KTNSVYSITLDVSKE 239
N VE D++N K ++ LD+ T++V++ +L +++E
Sbjct: 64 NPVEDYDSKNQKVVEASKLDLDATSTVWAESLSINRE 100
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 145 FWRRYSNRVSSQKNLLNNSKKIKEEKVNPI-KIGEIINVENT 185
F R N KNL++ SKK+ E + P+ KI E+ N +T
Sbjct: 95 FSRMCPNFNLETKNLISISKKLSENENLPVSKIAEVTNELDT 136
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 191 KFIAALNEDVQI-DNEVEIADNENNKQIQIL-NLDVKTNSVYSITLDVSKEGKNRF 244
+F+ A N+ +QI EI +++++ Q L NLDV T + D+ GK F
Sbjct: 260 EFVTA-NDPIQILGTSAEIVFPKDDEECQRLYNLDVTTEEILLCCSDLQVLGKKEF 314
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 218 QILNLDVKTNSVYSITLDVSKEGKNRFVCVPAQDRDNKNI 257
Q+LN + + Y++ +D+ K+GK V Q+ ++K +
Sbjct: 552 QVLNAPMDKDQNYALAVDMFKQGKITEKIVYGQELNDKKV 591
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 8.7
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 162 NSKKIKEEKVNPIKIGEIINVENTRRNSMK-FIAALNEDVQIDNEVEIADNENNKQIQIL 220
N K KEE N E++N + N ++ F ++N+ +Q D E E+ N K + I
Sbjct: 573 NKLKDKEETYN-----EVMNAFQYKDNDLRRFHESINK-LQ-DREKELTSNLEKKNLVIS 625
Query: 221 NLDVKTNSVYSITLDVSKEGKNRFVCVPAQDRDNKNI 257
+L +T ++ L+ +E +++ A+D DN N+
Sbjct: 626 SLR-ETVAM----LEKERESIKKYLSGNAKDLDNTNL 657
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.137 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,156,921
Number of Sequences: 5004
Number of extensions: 46350
Number of successful extensions: 156
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 17
length of query: 269
length of database: 2,362,478
effective HSP length: 72
effective length of query: 197
effective length of database: 2,002,190
effective search space: 394431430
effective search space used: 394431430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -