Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002245-TA|BGIBMGA002245-PA|IPR000276|Rhodopsin-like GPCR
superfamily
(269 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0872 - 11983151-11983432,11983488-11983598,11983744-119840... 33 0.24
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 31 0.98
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 30 2.3
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302... 29 3.9
03_02_0158 - 6020682-6020796,6021112-6021329,6021548-6021589,602... 28 6.9
12_02_0879 + 23960084-23961551,23961796-23962184 28 9.1
04_04_1031 - 30254665-30255794,30256181-30257036 28 9.1
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 28 9.1
01_06_0179 + 27250706-27251593,27252172-27252462,27252510-272525... 28 9.1
>03_02_0872 -
11983151-11983432,11983488-11983598,11983744-11984007,
11984038-11984163,11984257-11984481,11984757-11985311,
11985390-11985695,11985815-11986369
Length = 807
Score = 33.1 bits (72), Expect = 0.24
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 189 SMKFIAALNEDVQIDNEVEIADNENNKQIQILNLDVKTNSVYSITLDVSKEGKNRFVCVP 248
S F+A ++ V+ D+ E D+E++ ++ L++D K S S T S K+R V
Sbjct: 318 STSFVATADQPVECDSSDEADDDEDDDELTPLSVDNKRTSSTSTTAS-SPSKKSRSPAVR 376
Query: 249 AQDRD 253
DR+
Sbjct: 377 VMDRN 381
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 31.1 bits (67), Expect = 0.98
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 189 SMKFIAALNEDVQIDNEVEIADNENNKQIQILNLDVKTNSVYSITLDVSKEGKNRFVCVP 248
S+ F+A ++ V+ D+ E D+E++ ++ L++ K S S T S K+R V
Sbjct: 312 SISFVATADQPVECDSSDEADDDEDDDELTPLSVGNKRTSSTSTTAS-SPSKKSRSPAVR 370
Query: 249 AQDRD 253
DR+
Sbjct: 371 VMDRN 375
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 4 PVIIAQSSKNTSGTGNVIRYRKQVILMLGTVVLSFFICLLPFKALTLWIIVFPPETIMSL 63
P+ QS N G V + + VI VV SF LP AL +++ + P ++
Sbjct: 386 PIAFVQSLANLEGIEKVAPFLRPVIDT--PVVKSFLQGFLPGLALKIFLYILPTVLMIMS 443
Query: 64 GIDGYYIL 71
++GY L
Sbjct: 444 KVEGYVSL 451
>12_01_0386 +
3023431-3023522,3023951-3024097,3024227-3024308,
3024801-3024842,3024930-3024989,3025430-3027109,
3027239-3027340,3027461-3027604,3027704-3027829,
3027933-3028100
Length = 880
Score = 29.1 bits (62), Expect = 3.9
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 179 IINVENTRRNSMKFIAALNE--DVQID----------NEVEIADNENNKQIQILNLDVKT 226
I+ +EN RR S + AA + DVQ+ N + N+ ++ + V T
Sbjct: 389 IVKMENPRRQSFQDPAAPSSGSDVQVSSGLKTTTRQFNPEHMCQNKKTNEVNDSSAAVST 448
Query: 227 NSVYSIT----LDVSKEGKNRFVCVPAQDRDNKNIFIYDYN 263
V ++ LD+S E + FV P+ + D +IF D++
Sbjct: 449 QDVKNMDRHKILDISNERTSSFVMDPSTENDLFDIFGTDFH 489
>03_02_0158 -
6020682-6020796,6021112-6021329,6021548-6021589,
6021680-6021721,6021929-6022028,6022149-6022210,
6022981-6023052
Length = 216
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 159 LLNNSKKIKEEKVNPIKIGEIINVENTRRNSMKFIAALNEDVQIDNEVEIADNENNKQIQ 218
L + I E + P+ + E+ +EN S+K I + +D ++ E +Q+Q
Sbjct: 40 LQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKE--QQLQ 97
Query: 219 ILNLDVK 225
LN D++
Sbjct: 98 DLNKDLR 104
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 148 RYSNRVSSQKNLLNNSK---KIKEEKVNPIKIGEIINVENTRRNSMKFIAALNE 198
+ ++R + N+ N++ K +EEK++P+K+ IN+ + S+K A E
Sbjct: 388 KQTDRKMTVMNVAKNARVWQKKEEEKISPVKLSRSINLSSKSLLSIKMRAVKKE 441
>04_04_1031 - 30254665-30255794,30256181-30257036
Length = 661
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 85 INPILYNLMSSKFRDGFVKLLKINKLMRCSRN 116
IN I++ +++ DGFV +L +C RN
Sbjct: 69 INNIMFGILNISLLDGFVSILASATSQQCKRN 100
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 150 SNRVSSQKNLLNNSKKIKEEKVNPIKIGEIINVENTRRNSMKFIAALNEDVQIDNEVEIA 209
S+ V S +N K++E + NP+K + N + + +AAL E ++ E
Sbjct: 299 SDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEAARVKARTEKL 358
Query: 210 DNENNK 215
D++ K
Sbjct: 359 DSKRTK 364
>01_06_0179 +
27250706-27251593,27252172-27252462,27252510-27252575,
27252732-27252871,27254709-27254814,27254898-27254990,
27255398-27255487,27256403-27256525,27256708-27256781,
27256878-27256932,27257087-27257322,27257959-27258088,
27258170-27258272,27258428-27258525,27258973-27259038,
27259252-27259419
Length = 908
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 56 PPETIMSLGIDGYYILLYFCRVMLYLNSAINPILYN 91
PP+ I G+D +LLY+ +L + +P+LYN
Sbjct: 300 PPDQIAWCGLDS--VLLYWSAALLMVGPNGDPVLYN 333
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.137 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,261,683
Number of Sequences: 37544
Number of extensions: 217840
Number of successful extensions: 547
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 9
length of query: 269
length of database: 14,793,348
effective HSP length: 81
effective length of query: 188
effective length of database: 11,752,284
effective search space: 2209429392
effective search space used: 2209429392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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